View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3131_low_6 (Length: 469)

Name: NF3131_low_6
Description: NF3131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3131_low_6
NF3131_low_6
[»] chr8 (1 HSPs)
chr8 (20-456)||(19963584-19964011)
[»] chr4 (4 HSPs)
chr4 (178-452)||(1661275-1661542)
chr4 (155-452)||(19910065-19910357)
chr4 (24-143)||(19910342-19910461)
chr4 (161-234)||(55877785-55877858)
[»] chr1 (2 HSPs)
chr1 (346-456)||(7881453-7881563)
chr1 (161-233)||(26496510-26496582)
[»] chr3 (3 HSPs)
chr3 (157-287)||(25490145-25490274)
chr3 (331-405)||(25490311-25490385)
chr3 (161-233)||(46594474-46594546)
[»] scaffold0405 (2 HSPs)
scaffold0405 (161-233)||(13354-13426)
scaffold0405 (330-394)||(13182-13246)
[»] chr6 (1 HSPs)
chr6 (161-233)||(4436292-4436364)
[»] chr5 (1 HSPs)
chr5 (161-233)||(37718796-37718868)


Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 20 - 456
Target Start/End: Original strand, 19963584 - 19964011
Alignment:
Q  20 aaaatgtatgaagtacggttcaaacctgttgtgaaggcagccattagagagatttcaaaacaggagaaatgggaatgtgatgcttttggcagtgtccaat 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| |||||    
T  19963584 aaaatgtatgaagtacggttcaaacctgttgtgaaggcagccattagagatatttcaaaacaggagaaataggaatgtgatgcttt-ggcagtgcccaat 19963682  T
Q  120 ttagtatcatttacagtcattcacnnnnnnnnagttctacaagtcattcactttgatgaatgctactttgcatattaactgtttgataaaaggatcatta 219  Q
    ||||||||||||| ||||||||||        ||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||    
T  19963683 ttagtatcatttatagtcattcacttttgtt-agtactacaagtcattcacttcgatgaatgctactttgcattttaactgtttgacaaaaggatcatta 19963781  T
Q  220 gaacttagttgaggtcttctctttgcatttcttaattcaagatatggaatagataatagctctcattaatcattatgcctgaaatttaaaacttannnnn 319  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||       ||||||||||||||||||||||||||         
T  19963782 gaacttagtcgaggtcttctctttgcatttcttaaatcaagatatggaatagataatagctc-------tcattatgcctgaaatttaaaacttattgtt 19963874  T
Q  320 nnnnctccatcaatttttgaatttaacaatgacgatgtaccattgcagggttccttggcaaaataaaggccttatttaaaggttttcttttgtcctttta 419  Q
        ||||  |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  19963875 ttttctcctccaatttttgaatttaacaatgacggtgtaccattgcagagttccttggcaaaataaaggccttatttgaagattttcttttgtcctttta 19963974  T
Q  420 tttgtggactagccgggtaagtttataaatttttcat 456  Q
    |||||||||| ||||||||||||||||||||||||||    
T  19963975 tttgtggactcgccgggtaagtttataaatttttcat 19964011  T

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Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 178 - 452
Target Start/End: Complemental strand, 1661542 - 1661275
Alignment:
Q  178 aatgctactttgcatattaactgtttgataaaaggatcattagaacttagttgaggtcttctctttgcatttcttaattcaagatatggaatagataata 277  Q
    |||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||| |||||| |||||||||||||||    
T  1661542 aatgctactttgcattctaactgtttgataaaaggatcattaaaacttagttgaggtcttctcagtgcatttcttaaatcaagacatggaatagataata 1661443  T
Q  278 gctctcattaatcattatgcctgaaatttaaaacttannnnnnnnnctccatcaatttttgaatttaacaatgacgatgtaccattgcagggttccttgg 377  Q
    ||||        ||||||||||| |||||||||||||         ||||  | |||||||||||||||||| | | ||||||||| |||| ||||||||    
T  1661442 gctc-------ccattatgcctgtaatttaaaacttattgttttttctcctcccatttttgaatttaacaattatggtgtaccattacaggcttccttgg 1661350  T
Q  378 caaaataaaggccttatttaaaggttttcttttgtccttttatttgtggactagccgggtaagtttataaatttt 452  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||| | || |||||||| ||||||||    
T  1661349 caaaataaaggccttatttgaaggttttcttttgtgcttttatttgtggactggtcgagtaagtttttaaatttt 1661275  T

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Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 155 - 452
Target Start/End: Complemental strand, 19910357 - 19910065
Alignment:
Q  155 tctacaagtcattcactttgatgaatgctacttt--gcatat-taactgtttgataaaaggatcattagaacttagttgaggtcttctctttgcatttct 251  Q
    |||||||||||||||||||||||||||||| |||  |||| | ||| ||| ||||||||||||||  ||||||||||||||||||||||| |||||||||    
T  19910357 tctacaagtcattcactttgatgaatgctattttttgcatttataattgtatgataaaaggatcacgagaacttagttgaggtcttctctatgcatttct 19910258  T
Q  252 taattcaagatatggaatagataatagctctcattaatcattatgcctgaaatttaaaacttannnnnnnnnctccatcaatttttgaatttaacaatga 351  Q
    ||| |||||| |||||||||||||||| ||||||||       | ||||| ||||||||||||         || |  |||||||||||||| | |||||    
T  19910257 taaatcaagacatggaatagataataggtctcatta-------tacctgagatttaaaacttattgttttttcttctccaatttttgaatttgagaatga 19910165  T
Q  352 cgatgtaccattgcagggttccttggcaaaataaaggccttatttaaaggttttcttttgtccttttatttgtggactagccgggtaagtttataaattt 451  Q
     |||| ||||||| ||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  19910164 agatgaaccattgaaggatttcttggcaaaataaaggccttatttaaaggtttt-ttttgtccttttatttgtggactggccgggtaagtttataaattt 19910066  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 19910461 - 19910342
Alignment:
Q  24 tgtatgaagtacggttcaaacctgttgtgaaggcagccattagagagatttcaaaacaggagaaatgggaatgtgatgcttttggcagtgtccaatttag 123  Q
    |||||||||||| |  |||||||||   |||| |||||||||||||||||||||||| |||||||||| ||||  ||| |||||||||||||||||||||    
T  19910461 tgtatgaagtacaggccaaacctgtgtggaagacagccattagagagatttcaaaacgggagaaatggaaatgcaatg-ttttggcagtgtccaatttag 19910363  T
Q  124 tatcatttac-agtcattcac 143  Q
    |||||| ||| ||||||||||    
T  19910362 tatcatctacaagtcattcac 19910342  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 55877785 - 55877858
Alignment:
Q  161 agtcattcactttgatgaatgctactttgcatattaactgtttgataaaaggatcattagaacttagttgaggt 234  Q
    |||||||| ||||||| || ||||||||||||  ||| ||| |||||||||||||  | ||| |||||||||||    
T  55877785 agtcattctctttgatcaaagctactttgcattctaagtgtatgataaaaggatcgcttgaatttagttgaggt 55877858  T

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Target: chr1 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 346 - 456
Target Start/End: Complemental strand, 7881563 - 7881453
Alignment:
Q  346 caatgacgatgtaccattgcagggttccttggcaaaataaaggccttatttaaaggttttcttttgtccttttatttgtggactagccgggtaagtttat 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| | ||| ||||  |||||    
T  7881563 caatgacgatgtaccattgcagggttccttggcaaaataaaggccttatttgaaggttttcttttgtcctcttattcgtggattggccaggtacatttat 7881464  T
Q  446 aaatttttcat 456  Q
    |||||||||||    
T  7881463 aaatttttcat 7881453  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 26496510 - 26496582
Alignment:
Q  161 agtcattcactttgatgaatgctactttgcatattaactgtttgataaaaggatcattagaacttagttgagg 233  Q
    ||||||||| |||||||||  ||||||||||| |||| ||||  |||||| |||||  |||||||| ||||||    
T  26496510 agtcattcagtttgatgaaatctactttgcattttaattgttctataaaaagatcacaagaacttacttgagg 26496582  T

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Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 157 - 287
Target Start/End: Original strand, 25490145 - 25490274
Alignment:
Q  157 tacaagtcattcactttgatgaatgctactttgcatattaactgtttgataaaaggatcattagaacttagttgaggtcttctctttgcatttcttaatt 256  Q
    ||||||||||||||||||||||| ||||||||||||  |||| ||||||||||||||||| ||||||| |||||||||||||||| |||| || |||| |    
T  25490145 tacaagtcattcactttgatgaaagctactttgcattataaccgtttgataaaaggatcactagaactaagttgaggtcttctctatgcaatt-ttaaat 25490243  T
Q  257 caagatatggaatagataatagctctcatta 287  Q
    ||||| ||| ||||| |||| ||||||||||    
T  25490244 caagacatgaaataggtaatggctctcatta 25490274  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 405
Target Start/End: Original strand, 25490311 - 25490385
Alignment:
Q  331 aatttttgaatttaacaatgacgatgtaccattgcagggttccttggcaaaataaaggccttatttaaaggtttt 405  Q
    ||||||| ||||| ||||||| |||||||||||   ||||||||||| |||||||||| ||||||| ||| ||||    
T  25490311 aatttttaaatttgacaatgaggatgtaccattagcgggttccttggaaaaataaaggtcttatttgaagttttt 25490385  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 46594546 - 46594474
Alignment:
Q  161 agtcattcactttgatgaatgctactttgcatattaactgtttgataaaaggatcattagaacttagttgagg 233  Q
    ||||||||| |||||||||  |||||||||||  ||| |||| ||||||| |||||  |||||||| ||||||    
T  46594546 agtcattcagtttgatgaaatctactttgcattataattgttcgataaaaagatcacaagaacttacttgagg 46594474  T

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Target: scaffold0405 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0405
Description:

Target: scaffold0405; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 13426 - 13354
Alignment:
Q  161 agtcattcactttgatgaatgctactttgcatattaactgtttgataaaaggatcattagaacttagttgagg 233  Q
    |||| ||||||||||||| |||||||||||    |||||||||||||||| ||||  |||||||| |||||||    
T  13426 agtcgttcactttgatgagtgctactttgccgtctaactgtttgataaaatgatctctagaacttggttgagg 13354  T

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Target: scaffold0405; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 394
Target Start/End: Complemental strand, 13246 - 13182
Alignment:
Q  330 caatttttgaatttaacaatgacgatgtaccattgcagggttccttggcaaaataaaggccttat 394  Q
    |||||| ||||| | ||||||| || || || |||||||||||||||||||||  ||||||||||    
T  13246 caatttctgaatctgacaatgaggaagttcctttgcagggttccttggcaaaactaaggccttat 13182  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 4436292 - 4436364
Alignment:
Q  161 agtcattcactttgatgaatgctactttgcatattaactgtttgataaaaggatcattagaacttagttgagg 233  Q
    ||||||||| |||||||||  |||||||||||  ||| |||| ||||||| |||||  |||||||| ||||||    
T  4436292 agtcattcagtttgatgaaatctactttgcattataattgttcgataaaaagatcacaagaacttacttgagg 4436364  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 37718868 - 37718796
Alignment:
Q  161 agtcattcactttgatgaatgctactttgcatattaactgtttgataaaaggatcattagaacttagttgagg 233  Q
    ||||||||| |||||||||  |||||||||||  ||| |||| ||||||| |||||  |||||||| ||||||    
T  37718868 agtcattcagtttgatgaaatctactttgcattataattgttcgataaaaagatcacaagaacttacttgagg 37718796  T

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