View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3131_low_7 (Length: 364)
Name: NF3131_low_7
Description: NF3131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3131_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 49302032 - 49302385
Alignment:
| Q |
1 |
tggaagttcagatatagttcaatcactatgtgaacctgaagaagatgaaatagttcttaatggtatggttgaaccagattactgcacaaatctgctcaat |
100 |
Q |
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| T |
49302032 |
tggaagttcagatatagttcaatcactatgtgaacctgaagaagatgaaatagttcttaatggtatggttgaaccagattactgcacaaatctgcttaat |
49302131 |
T |
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| Q |
101 |
ggattgtcttttgtaaaatcagatattataaatggtggtggagttttgagctaccttgagcaaaggccaataaggtatacacatcttttacaagcaaagg |
200 |
Q |
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| T |
49302132 |
ggattgtcttttgtaaaatcagatattataaatggtggtggagttttgagctaccttgagcaaaggccaataaggtatacacatcttttacaagcaaagg |
49302231 |
T |
|
| Q |
201 |
gagaaaaacaaaatgaagaaattgttagaggaaagactacatggaagaggaaattcactacatgtccattttctacatagtaatgtatgttgaagtgggc |
300 |
Q |
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| T |
49302232 |
gagaaaaacaaaatgaagaaattgttagaggaaagactacatggaagaggaaattcactacatgtccattttctacatagtaatgtatgttgaagtggtc |
49302331 |
T |
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| Q |
301 |
tttaagaattgggaactgaaagggtacaaagttcaaattgtactatggtctgtg |
354 |
Q |
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| T |
49302332 |
tttaagaattgggaactgaaagggtacaaagttcaaattgtactatggtgtgtg |
49302385 |
T |
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