View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3132-Insertion-1 (Length: 806)
Name: NF3132-Insertion-1
Description: NF3132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3132-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 258 - 608
Target Start/End: Complemental strand, 26217609 - 26217246
Alignment:
| Q |
258 |
aatccagcctatcataggatttactaatataaagtctatgagctacattaccttgattaactttcacct-------------atgaacaatttcaatggt |
344 |
Q |
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| T |
26217609 |
aatccaacctatcataggatttactaatataaagtctatgagctacattaccttgattaactttcaccttaggtttcacacgatgaacaatttcaatggt |
26217510 |
T |
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| Q |
345 |
tgtcattgcattatcgagaatagagtaacttgacacaaaagctgattgatttttgtatatacacttatcaagtacactttcaacatgttggctaatactt |
444 |
Q |
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| T |
26217509 |
tgtcattgcattatcgagaatagagtaacttgacacaaaagctgattgatttttgtatatacacttatcaagtacactttcaacatgttggctaatactt |
26217410 |
T |
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| Q |
445 |
taaccacaactttatagagcacattacataaagctatagatgaataaacctctcctatagggattagatcaatgtttgttgagcttgtaattaggctagg |
544 |
Q |
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| T |
26217409 |
taaccacaactttatagagcacattacataaagctatagatgaataaacctctcctatagggattagatcaatgtttgttgagtttgtaattaggctagg |
26217310 |
T |
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| Q |
545 |
aggaaagataacagagaccttcaaagtgcaacccgcagtaaatatatcatgaccacaatttttc |
608 |
Q |
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| T |
26217309 |
aggaaagataacagagaccttcaaagtgcaacccgcagtaaatatatgatgaccacaatttttc |
26217246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 26217803 - 26217609
Alignment:
| Q |
8 |
ataattagatcattagtacatatttagactccgtgaatttctcctttctaatcggggctgataagccttcatcataaagaaacccataagaaagggtccc |
107 |
Q |
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| T |
26217803 |
ataattagatcattagtacatatttagactccgtgaatttctcctttctaatcagggctgataaaccttcatcataaagaaacccataagaaagggtccc |
26217704 |
T |
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| Q |
108 |
cttgttgaagacctcttgcaagtatgatagggtccactacacttctattaacaatgacggagtaatccataattcaaacacacaacataatcgaa |
202 |
Q |
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| T |
26217703 |
cttgttgaagacctcttgcaagtatgacagggtccactacacttctattaacaatgacggagtaatccataattcaaacacacaacataatcgaa |
26217609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 605 - 806
Target Start/End: Complemental strand, 26217187 - 26216986
Alignment:
| Q |
605 |
tttcatagagaagatggtttccttgaattcttcaaataggaaagcagcaaatagaaactcattatccatactagtgaatagtgatagatggattaatggc |
704 |
Q |
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| T |
26217187 |
tttcatagagaagatggtttccttgaattcttcaaataggaaagcggcaaatagaaactcattatccatactagtgaatagtgttagatggattaatggt |
26217088 |
T |
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| Q |
705 |
attaagaatcgcctcactggagctattctgcttttaaaaaagttctaaaaaataatcacaagccatggaagtcattccgtcccacgttctacatattgtg |
804 |
Q |
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| T |
26217087 |
attaagaatcgcctcactggtgctattctgcttctaaaaaagttctaaaaaataatcacaagccatggaagtcattccgtcccgcgttctacatattgtg |
26216988 |
T |
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| Q |
805 |
cc |
806 |
Q |
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|| |
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| T |
26216987 |
cc |
26216986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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