View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3132-Insertion-2 (Length: 669)

Name: NF3132-Insertion-2
Description: NF3132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3132-Insertion-2
NF3132-Insertion-2
[»] chr3 (1 HSPs)
chr3 (8-669)||(3632199-3632860)


Alignment Details
Target: chr3 (Bit Score: 633; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 8 - 669
Target Start/End: Original strand, 3632199 - 3632860
Alignment:
Q  8 tgtatgagtggtaatatgattagtctcacatttttaaattctatttagtctttagtcaatgtaatctgtttttacatggatatagtacaataatgctaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3632199 tgtatgagtggtaatatgattagtctcacatttttaaattctatttagtctttagtcaatgtaatctgtttttacatggatatagtacaataatgctaat 3632298  T
Q  108 ggttcgcaaatggtacagtactacttatttttgcttcatattgaaaatcattctctgtttgtatttaattcaatttgattttcacccgttacattttagt 207  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3632299 ggtttgcaaatggtacagtactacttatttttgcttcatattgaaaatcattctctgtttgtatttaattcaatttgattttcacccgttacattttagt 3632398  T
Q  208 ttatcattcaattctgatagtcccttgtgattgttatattagttacattttttgctgacaccttctcttctttgaaacgaacaaggatttggcaccttct 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3632399 ttatcattcaattctgatagtcccttgtgattgttatattagttacattttttgctgacaccttctcttctttgaaacgaacaaggatttggcaccttct 3632498  T
Q  308 ccaaaatatggtattgatgtcaaagacgtcgatgtattatcaagggaagaaggtggttacaggagttgccatttattcttatctggaagtgatagttcat 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3632499 ccaaaatatggtattgatgtcaaagacgtcgatgtattatcaagggaagaaggtggatacaggagttgccatttattcttatctggaagtgatagttcat 3632598  T
Q  408 ctctcagtgttgctccatctcctggaaatgtaagttttattttctttcaactatcggattaaaatattgatattaaataaaatcatttttcaatcacata 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3632599 ctctcagtgttgctccatctcctggaaatgtaagttttattttctttcaactatcggattaaaatattgatattaaataaaatcatttttcaatcacata 3632698  T
Q  508 aaaaagttcaagtgcaaccttgtaatgtcaatgtatgaaccagttataagattcactaaataatatcactggaaggttttgaatttatctttaataattg 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3632699 aaaaagttcaagtgcaaccttgtaatgtcaatgtatgaaccagttataagattcactaaataatatcactggaaggttttgaatttatctttaataattg 3632798  T
Q  608 gttaacacaatttatctactgcagccnnnnnnnccttttcgaatatgtttatcttcccatag 669  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  3632799 gttaacacaatttatctactgcagcctttttttccttttcgaatatgtttatcttcccatag 3632860  T

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