View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3132-Insertion-4 (Length: 357)

Name: NF3132-Insertion-4
Description: NF3132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3132-Insertion-4
NF3132-Insertion-4
[»] chr6 (22 HSPs)
chr6 (8-357)||(7132101-7132450)
chr6 (8-245)||(7135136-7135373)
chr6 (8-245)||(7138059-7138296)
chr6 (95-348)||(6423710-6423963)
chr6 (88-311)||(6427023-6427246)
chr6 (28-238)||(19633012-19633228)
chr6 (49-316)||(8913372-8913639)
chr6 (56-153)||(6417092-6417189)
chr6 (56-357)||(7993508-7993797)
chr6 (100-222)||(6596238-6596360)
chr6 (98-224)||(10579099-10579225)
chr6 (254-356)||(6403366-6403468)
chr6 (83-315)||(6410532-6410765)
chr6 (84-144)||(14809708-14809768)
chr6 (278-357)||(6594139-6594218)
chr6 (51-134)||(9412143-9412223)
chr6 (85-134)||(28935357-28935406)
chr6 (86-153)||(6593920-6593987)
chr6 (98-144)||(6395546-6395592)
chr6 (235-309)||(10579302-10579376)
chr6 (97-153)||(6403578-6403634)
chr6 (84-144)||(14821393-14821453)
[»] chr7 (3 HSPs)
chr7 (19-153)||(10615713-10615847)
chr7 (49-153)||(10169002-10169106)
chr7 (49-153)||(10176527-10176631)
[»] chr1 (4 HSPs)
chr1 (28-144)||(19467362-19467478)
chr1 (188-348)||(33161000-33161160)
chr1 (73-155)||(7555196-7555278)
chr1 (86-144)||(33161207-33161265)
[»] chr4 (13 HSPs)
chr4 (84-144)||(553768-553828)
chr4 (104-153)||(571330-571379)
chr4 (69-155)||(21833249-21833335)
chr4 (71-144)||(661867-661940)
chr4 (71-144)||(1755562-1755635)
chr4 (8-127)||(53760207-53760323)
chr4 (112-144)||(1547718-1547750)
chr4 (107-155)||(3437630-3437678)
chr4 (52-122)||(532773-532843)
chr4 (71-137)||(8186333-8186399)
chr4 (91-136)||(1545881-1545926)
chr4 (278-315)||(3438186-3438223)
chr4 (106-155)||(55907684-55907733)
[»] chr3 (3 HSPs)
chr3 (27-153)||(51763323-51763446)
chr3 (56-153)||(13469608-13469705)
chr3 (95-144)||(1657536-1657585)
[»] chr8 (8 HSPs)
chr8 (51-137)||(5766559-5766645)
chr8 (52-137)||(14004159-14004244)
chr8 (51-153)||(17642889-17642991)
chr8 (104-153)||(21236154-21236203)
chr8 (73-153)||(17635632-17635712)
chr8 (108-144)||(32151977-32152013)
chr8 (95-144)||(28246056-28246105)
chr8 (96-141)||(34935986-34936031)
[»] chr2 (1 HSPs)
chr2 (106-155)||(1036620-1036669)
[»] chr5 (2 HSPs)
chr5 (94-137)||(28532829-28532872)
chr5 (87-143)||(28661184-28661240)


Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 357
Target Start/End: Complemental strand, 7132450 - 7132101
Alignment:
Q  8 accttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7132450 accttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcg 7132351  T
Q  108 agctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattgttttccaatg 207  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7132350 agctttctcccaaaacattacaactttggcatctctcgattgttccaacatgtttctctacaacaacgatctgttacttattgccgattgttttccaatg 7132251  T
Q  208 cttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7132250 cttaaagaactcaaccttggtcaccctttggtgaacaatcaaactaacttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatt 7132151  T
Q  308 tggatcttaggtgcacatattttctgaatgatgaacatgtttctgagttg 357  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||    
T  7132150 tgaatcttaggtgcacatattttctgaatgatgaacatgtttctgagttg 7132101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 245
Target Start/End: Complemental strand, 7135373 - 7135136
Alignment:
Q  8 accttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7135373 accttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcg 7135274  T
Q  108 agctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattgttttccaatg 207  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7135273 agctttctcccaaaacattacaactttggcatctctcgattgttccaacacgtgtctctacaacaacgatctgttacttattgccgattgttttccaatg 7135174  T
Q  208 cttaaagaactcaaccttggtcaccctttggtgaacaa 245  Q
    |  |||||||||||||||||||||| ||||||| ||||    
T  7135173 cacaaagaactcaaccttggtcaccttttggtgcacaa 7135136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 245
Target Start/End: Complemental strand, 7138296 - 7138059
Alignment:
Q  8 accttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcg 107  Q
    |||| ||||| ||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7138296 acctcgacatacttctccgcaaaatctctcatttcccactaaagaaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcg 7138197  T
Q  108 agctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattgttttccaatg 207  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7138196 agctttctcccaaaacattacaactttggcatctctcgattgttccaacacgtttctctacaacaacgatctgttacttattgccgattgttttccaatg 7138097  T
Q  208 cttaaagaactcaaccttggtcaccctttggtgaacaa 245  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  7138096 cttaaagaactcaaccttggtcaccttttggtgcacaa 7138059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 95 - 348
Target Start/End: Complemental strand, 6423963 - 6423710
Alignment:
Q  95 caaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccga 194  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||  |||||  |  | |||||||| ||||| ||| ||||||||| | ||| |    
T  6423963 caaatgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgttatagcatgtttctctccaacaccgacctgttacttgtggccaa 6423864  T
Q  195 ttgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaagtggcga 294  Q
    |||||| ||| |||| ||||||||||||||    | ||||||||| | | || |||| || |||||||||||||||| |  | ||||||||||||| | |    
T  6423863 ttgtttcccattgctcaaagaactcaacctcaaacgccctttggtcatcgatgaaactaatttcattaatggaattcgcaatttgttatccaagtgtcaa 6423764  T
Q  295 tgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtt 348  Q
    ||||||||||||||| |||||   ||||  ||||||||||| ||| ||||||||    
T  6423763 tgtatacaacatttgaatcttgactgcatttattttctgaaggatcaacatgtt 6423710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 88 - 311
Target Start/End: Complemental strand, 6427246 - 6427023
Alignment:
Q  88 tttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttactta 187  Q
    ||||||| ||| ||||||| || |||||||||||| |||||||||||||| | ||||  ||||| |  ||| ||| |||  ||||||||||||| ||  |    
T  6427246 tttcctgtaaacgggttgcaagttttctcccaaaatattacaactttgacctttctcacttgttacggtacttttttctgtaacaacgatctgtcaccca 6427147  T
Q  188 ttgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaa 287  Q
    |||  |||||||| ||  |||| ||| ||||||||||   |||||||||||| | |||| |  | ||||||||||||  |||||||||||||||||||||    
T  6427146 ttgttgattgtttccctttgctcaaacaactcaacctccatcaccctttggtcatcaataagcctaacttcattaattcaattcactgtatgttatccaa 6427047  T
Q  288 gtggcgatgtatacaacatttgga 311  Q
    ||| | ||||||||||||||||||    
T  6427046 gtgtccatgtatacaacatttgga 6427023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 28 - 238
Target Start/End: Complemental strand, 19633228 - 19633012
Alignment:
Q  28 aaaatctctcctttcccactaaagaaactcacatcccttagtatctc---caaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaaca 124  Q
    |||||||||| || |||| | |||||||||||||| ||| |||||||   |||||||  | |||||||  ||||||||||||||||||||||| ||| ||    
T  19633228 aaaatctctcgttacccattgaagaaactcacatctctttgtatctctagcaaccaattcccctttcccacaaatgggttgcgagctttctccgaaagca 19633129  T
Q  125 ttacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttact---tattgccgattgttttccaatgcttaaagaactcaa 221  Q
    ||||||||||||| ||||||  |||  |  | | |||||||||||||||||| ||||||||    |||||||||||||| ||| || | |||||||||||    
T  19633128 ttacaactttgacctctctcacttgcactcacatgtttctctacaacaacgaactgttactcaacattgccgattgtttcccattgttgaaagaactcaa 19633029  T
Q  222 ccttggtcaccctttgg 238  Q
    ||| | | |||||||||    
T  19633028 cctcgcttaccctttgg 19633012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 49 - 316
Target Start/End: Original strand, 8913372 - 8913639
Alignment:
Q  49 aagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgatt 148  Q
    |||||||||||||| || | |||||||||||||   ||||||||||| |||||||||| || ||| ||  |||| |||||||||||||| |||||| |||    
T  8913372 aagaaactcacatcgctcaatatctccaaccaatggacctttcctgctaatgggttgctagttttatctaaaaagattacaactttgacctctctcaatt 8913471  T
Q  149 gttccaatacgtttctctacaacaacgatctgttacttattgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatca 248  Q
    ||||||| | ||||||  | |||||| | |||||| |  |||  | |||||| ||  |||||||||||||||||||| ||||| | ||||| ||| ||||    
T  8913472 gttccaacatgtttcttgataacaacaaactgttattcgttgttggttgtttccctttgcttaaagaactcaaccttagtcacaccttggtcaactatca 8913571  T
Q  249 aacaaacttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttggatctta 316  Q
     |  ||  || |||||  |||||||  | ||||||||||||| | |||| |||||||||||| |||||    
T  8913572 cagtaatgtctttaattaaattcaccatttgttatccaagtgtcaatgtttacaacatttggttctta 8913639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 6417189 - 6417092
Alignment:
Q  56 tcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 153  Q
    ||||||| |||| |||||||||||||| ||| ||||| | ||||||||| ||||||||||||||||| | |||||||||||| ||||||  |||||||    
T  6417189 tcacatcacttaatatctccaaccaacccacttttcccgtaaatgggttacgagctttctcccaaaagaatacaactttgacctctctcacttgttcc 6417092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 56 - 357
Target Start/End: Original strand, 7993508 - 7993797
Alignment:
Q  56 tcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaa 155  Q
    |||||||||||| ||||||| |||||  || |||||| ||  |||| |||||||| ||  ||||||||||||||| |||||| |||||| ||||||||||    
T  7993508 tcacatcccttaatatctccgaccaatgcaactttcccgcctatggtttgcgagcatttgcccaaaacattacaattttgacctctctcaattgttccaa 7993607  T
Q  156 tacgtttctctacaacaacgatctgttacttattgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaac 255  Q
    ||| |||||    ||   ||  |||||||| |||||| ||||||| ||  |||| |||||||||||||| ||||            ||||| | || | |    
T  7993608 tacttttcttggtaagggcggcctgttactcattgccaattgtttccctttgctcaaagaactcaacctcggtc------------acaatgacactagc 7993695  T
Q  256 ttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtttctgagt 355  Q
    | |||||||| | |||||| | |||| |||||||| ||||||||||||||||| |||||||   | |  |||||||||||||||  ||||||| ||||||    
T  7993696 tacattaatgaatttcactatttgttgtccaagtgtcgatgtatacaacatttagatcttaatggtatttattttctgaatgatctacatgttgctgagt 7993795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 6596238 - 6596360
Alignment:
Q  100 gggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattgtt 199  Q
    |||||||||| ||||||||||||||| ||||||||||| ||||||  |||||| |  |  ||||||||||| || ||  ||||||| ||||| |||||||    
T  6596238 gggttgcgagttttctcccaaaacataacaactttgacctctctcacttgttctataaactttctctacaaaaatgacttgttactcattgctgattgtt 6596337  T
Q  200 ttccaatgcttaaagaactcaac 222  Q
    | ||| |||| ||||||||||||    
T  6596338 tcccattgctcaaagaactcaac 6596360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 224
Target Start/End: Original strand, 10579099 - 10579225
Alignment:
Q  98 atgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattg 197  Q
    ||||||| |||||||||||||||||||| ||||||||||||  | ||  |||||| | |   ||||||||||| || ||  |||||||  ||||||||||    
T  10579099 atgggttacgagctttctcccaaaacataacaactttgacaagtttcacttgttctactgactttctctacaaaaatgacttgttactcgttgccgattg 10579198  T
Q  198 ttttccaatgcttaaagaactcaacct 224  Q
    ||| ||| |||| ||||||||||||||    
T  10579199 tttcccattgctcaaagaactcaacct 10579225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 356
Target Start/End: Complemental strand, 6403468 - 6403366
Alignment:
Q  254 acttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtttctga 353  Q
    |||| |||||||||||  ||| | |||||||||||||  ||||||||||||||||||||||||    ||  |||||||||||||||  ||||||| ||||    
T  6403468 actttattaatggaatatactctctgttatccaagtgtagatgtatacaacatttggatcttaataacagttattttctgaatgatttacatgttgctga 6403369  T
Q  354 gtt 356  Q
    |||    
T  6403368 gtt 6403366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 315
Target Start/End: Complemental strand, 6410765 - 6410532
Alignment:
Q  83 acacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgtt 182  Q
    ||||||||||   ||||||||||| || ||||||||||||||||||||||||||| ||| ||  |||  || |   |||  |  | |||||| | ||| |    
T  6410765 acacctttcccataaatgggttgcaagttttctcccaaaacattacaactttgacctctttcacttgcccctacgtgttatttgataacaacaacctgat 6410666  T
Q  183 acttattgccgattgttttccaatgcttaaagaactcaa-ccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgtt 281  Q
    |||  |||| |||||||| ||| |||| ||||||||||| |||   |||||||| | | ||  ||| | | || ||||||||||||||||||| | ||||    
T  6410665 actctttgctgattgtttcccattgctcaaagaactcaaacctcattcacccttcgttcaagtatcgatctaatttcattaatggaattcactatctgtt 6410566  T
Q  282 atccaagtggcgatgtatacaacatttggatctt 315  Q
    ||||||||| | |||| |||||||| ||||||||    
T  6410565 atccaagtgccaatgtttacaacatatggatctt 6410532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 14809768 - 14809708
Alignment:
Q  84 cacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 144  Q
    ||||||||| ||||| ||||||| || ||||||||||||||||||||||||| | ||||||    
T  14809768 cacctttcccgcaaaagggttgcaagatttctcccaaaacattacaactttggcctctctc 14809708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 357
Target Start/End: Original strand, 6594139 - 6594218
Alignment:
Q  278 tgttatccaagtggcgatgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtttctgagttg 357  Q
    ||||||||||||| |||||||||||||||||| |||||| || | |   ||||||||||||| |||||||| | ||||||    
T  6594139 tgttatccaagtgtcgatgtatacaacatttgaatcttaagtacgctcgttttctgaatgatcaacatgttgccgagttg 6594218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 134
Target Start/End: Complemental strand, 9412223 - 9412143
Alignment:
Q  51 gaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaacttt 134  Q
    ||||||| |||| |||| | |||||||||| | |||| |||| ||   |||||||||||||||||||||||| |||||||||||    
T  9412223 gaaactctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaacttt 9412143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 28935406 - 28935357
Alignment:
Q  85 acctttcctgcaaatgggttgcgagctttctcccaaaacattacaacttt 134  Q
    ||||||||  |||| ||||||||||| |||||||||||||||||||||||    
T  28935406 acctttcccacaaaagggttgcgagccttctcccaaaacattacaacttt 28935357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 6593920 - 6593987
Alignment:
Q  86 cctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 153  Q
    |||||||  ||||||| ||||||| |||||| ||||| |||||||||||||| ||| || ||||||||    
T  6593920 cctttccctcaaatggtttgcgagttttctcacaaaagattacaactttgacctctttcaattgttcc 6593987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 6395592 - 6395546
Alignment:
Q  98 atgggttgcgagctttctcccaaaacattacaactttgacatctctc 144  Q
    ||||||||| |||| |||||||||| |||||||||||||| ||||||    
T  6395592 atgggttgcaagctctctcccaaaatattacaactttgacctctctc 6395546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 10579302 - 10579376
Alignment:
Q  235 ttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttg 309  Q
    ||||| ||||||| |||  | ||||||||||||||||||| | ||||||| ||||| | |||||| |||||||||    
T  10579302 ttggtcaacaatcgaactgatttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttg 10579376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 6403634 - 6403578
Alignment:
Q  97 aatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 153  Q
    |||||||||||||||||||||| |||  | || |||||||| ||||| |||||||||    
T  6403634 aatgggttgcgagctttctcccgaaaggtcactactttgacctctcttgattgttcc 6403578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 14821453 - 14821393
Alignment:
Q  84 cacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 144  Q
    ||||||||| ||||||||||||||  ||||||| |  ||| ||||||||||||| ||||||    
T  14821453 cacctttcccgcaaatgggttgcggactttctcacgtaacgttacaactttgacctctctc 14821393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 10615847 - 10615713
Alignment:
Q  19 cttctccacaaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctccc 118  Q
    ||||||| ||||||||||| |||||||  |  |||  ||||||| |||| ||| |||||||||| |||  |||| ||||||||||| |||||||||||||    
T  10615847 cttctccgcaaaatctctcgtttcccatcattgaacatcacatcacttaatatttccaaccaacccacagttcccgcaaatgggttacgagctttctccc 10615748  T
Q  119 aaaacattacaactttgacatctctcgattgttcc 153  Q
    |||| |||||||||||||| ||||||  |||||||    
T  10615747 aaaagattacaactttgacctctctcacttgttcc 10615713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 153
Target Start/End: Original strand, 10169002 - 10169106
Alignment:
Q  49 aagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgatt 148  Q
    |||||||||||||| ||   ||| ||| |||||  |||| |||| |||||||||||||||| |||||| ||||| |||| ||||||||| ||||||  ||    
T  10169002 aagaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcactt 10169101  T
Q  149 gttcc 153  Q
    |||||    
T  10169102 gttcc 10169106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 153
Target Start/End: Original strand, 10176527 - 10176631
Alignment:
Q  49 aagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgatt 148  Q
    |||||||||||||| ||   ||| ||| |||||  |||| |||| |||||||||||||||| |||||| ||||| |||| ||||||||| ||||||  ||    
T  10176527 aagaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcactt 10176626  T
Q  149 gttcc 153  Q
    |||||    
T  10176627 gttcc 10176631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 144
Target Start/End: Original strand, 19467362 - 19467478
Alignment:
Q  28 aaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacatta 127  Q
    |||||||||| ||||||| | || ||||||||||| || | ||||||||||  ||||||| |||| |||||||||||||||| |||| | ||||| ||||    
T  19467362 aaaatctctcatttcccattgaaaaaactcacatctctcattatctccaacagacacaccattcccgcaaatgggttgcgagttttcactcaaaatatta 19467461  T
Q  128 caactttgacatctctc 144  Q
    |||||||||| ||||||    
T  19467462 caactttgacctctctc 19467478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 188 - 348
Target Start/End: Complemental strand, 33161160 - 33161000
Alignment:
Q  188 ttgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaa 287  Q
    ||||||||||||| ||  |||| ||| |||||||||| |||||||||  | | |||||||| || ||||||||||||||| |||||| | | ||||||||    
T  33161160 ttgccgattgtttccctttgctcaaaaaactcaacctcggtcaccctcagttcaacaatcacactaacttcattaatggatttcactctctcttatccaa 33161061  T
Q  288 gtggcgatgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtt 348  Q
     || | || ||||||| |||||||||| |    ||| ||||||||||||||| ||||||||    
T  33161060 ctgtcaatatatacaatatttggatctaaatcacacttattttctgaatgatcaacatgtt 33161000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 155
Target Start/End: Complemental strand, 7555278 - 7555196
Alignment:
Q  73 tccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaa 155  Q
    |||||||||| |||| | ||||||| ||| |||||||||||||||||||| ||||||||||| || || |||  |||||||||    
T  7555278 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 7555196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 33161265 - 33161207
Alignment:
Q  86 cctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 144  Q
    ||||||| || ||||| |||||| |||||||||||| ||||| ||||||||| ||||||    
T  33161265 cctttcccgctaatggcttgcgaactttctcccaaaccattaaaactttgacttctctc 33161207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 553828 - 553768
Alignment:
Q  84 cacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 144  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  553828 caccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctctctc 553768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 571379 - 571330
Alignment:
Q  104 tgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 153  Q
    ||||||| ||||||||||| ||||||||||||||||||||| ||||||||    
T  571379 tgcgagcattctcccaaaatattacaactttgacatctctcaattgttcc 571330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 21833249 - 21833335
Alignment:
Q  69 tatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaa 155  Q
    |||||||||| ||| |||| |||| ||| |||||||||||| |||  | ||||||||||| |||||||| ||||||  |||||||||    
T  21833249 tatctccaacaaacccaccattcccgcagatgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgttccaa 21833335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 661940 - 661867
Alignment:
Q  71 tctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 144  Q
    |||||||||||  |||| |||| || ||||| |||||||||||||||||| | ||||||||||| || ||||||    
T  661940 tctccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctctctc 661867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 1755635 - 1755562
Alignment:
Q  71 tctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 144  Q
    |||||||||||||| || ||||  | || ||||||| ||||||||| ||||| |||||||||||||| ||||||    
T  1755635 tctccaaccaacacgccattcccaccaaagggttgcaagctttctctcaaaagattacaactttgacctctctc 1755562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 53760207 - 53760323
Alignment:
Q  8 accttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcg 107  Q
    ||||||||| | |||| | || |||||||| ||||||| |   |||||||||||| || | | |||||||||||  |||  | | |||||||||||||||    
T  53760207 accttgacaaggttcttcgcagaatctctcgtttcccatt---gaaactcacatcactcaatctctccaaccaatccactatccatgcaaatgggttgcg 53760303  T
Q  108 agctttctcccaaaacatta 127  Q
    |||||||| |||||||||||    
T  53760304 agctttcttccaaaacatta 53760323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 1547718 - 1547750
Alignment:
Q  112 ttctcccaaaacattacaactttgacatctctc 144  Q
    |||||||||||||||||||||||||||||||||    
T  1547718 ttctcccaaaacattacaactttgacatctctc 1547750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 3437630 - 3437678
Alignment:
Q  107 gagctttctcccaaaacattacaactttgacatctctcgattgttccaa 155  Q
    |||||||||||||||| |||||||||||||| ||||||  |||||||||    
T  3437630 gagctttctcccaaaagattacaactttgacctctctcagttgttccaa 3437678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 532843 - 532773
Alignment:
Q  52 aaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaa 122  Q
    ||||||||||| || | | |||| |||||||||||| |||| ||||||||||| ||||| |||||| ||||    
T  532843 aaactcacatcactcaatctctctaaccaacacaccattcccgcaaatgggttacgagccttctccaaaaa 532773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 8186333 - 8186399
Alignment:
Q  71 tctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgac 137  Q
    |||| ||| ||| |||| ||||||||||||| ||||||| | |||||| ||| ||||||||||||||    
T  8186333 tctctaacaaacccaccattcctgcaaatggattgcgagttctctcccgaaatattacaactttgac 8186399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 1545926 - 1545881
Alignment:
Q  91 cctgcaaatgggttgcgagctttctcccaaaacattacaactttga 136  Q
    ||||| |||||||||||| ||||||| ||||| |||||||||||||    
T  1545926 cctgccaatgggttgcgatctttctctcaaaatattacaactttga 1545881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 3438186 - 3438223
Alignment:
Q  278 tgttatccaagtggcgatgtatacaacatttggatctt 315  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  3438186 tgttatccaagtgtcaatgtatacaacatttggatctt 3438223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 55907684 - 55907733
Alignment:
Q  106 cgagctttctcccaaaacattacaactttgacatctctcgattgttccaa 155  Q
    ||||||||||||||||| |||||||||||||  ||||||  |||||||||    
T  55907684 cgagctttctcccaaaatattacaactttgaattctctcatttgttccaa 55907733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 27 - 153
Target Start/End: Original strand, 51763323 - 51763446
Alignment:
Q  27 caaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacatt 126  Q
    ||||||||||| ||||||| |   |||||||||||| |||| | ||||||| || |  ||||||||| ||||||||||||||| ||| || ||||| |||    
T  51763323 caaaatctctcgtttcccatt---gaaactcacatcacttaatctctccaaacagcttacctttcctacaaatgggttgcgagttttttcacaaaagatt 51763419  T
Q  127 acaactttgacatctctcgattgttcc 153  Q
    ||||||||||||||||||  |||||||    
T  51763420 acaactttgacatctctcacttgttcc 51763446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 56 - 153
Target Start/End: Original strand, 13469608 - 13469705
Alignment:
Q  56 tcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 153  Q
    ||||||| |||| | |||||||||||| |||  |||||||||||||||| ||||||||||||||||| | ||||||  |||| ||||||  |||||||    
T  13469608 tcacatcacttaatctctccaaccaacccactgttcctgcaaatgggttacgagctttctcccaaaagaatacaacgctgacctctctcacttgttcc 13469705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 1657585 - 1657536
Alignment:
Q  95 caaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 144  Q
    |||||||||||| ||||||||| |||||||||| |||||| || ||||||    
T  1657585 caaatgggttgcaagctttctctcaaaacattaaaactttaacctctctc 1657536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 5766559 - 5766645
Alignment:
Q  51 gaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgac 137  Q
    |||||||||||| || | | | |||||||||| || | ||||||| ||||| |||||||||||||| || |||||||||||||||||    
T  5766559 gaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgac 5766645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 137
Target Start/End: Complemental strand, 14004244 - 14004159
Alignment:
Q  52 aaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgac 137  Q
    ||||||||||| || | | | |||||||||| || | ||||||| ||||| |||||||||||||| || |||||||||||||||||    
T  14004244 aaactcacatcgctcaatctttccaaccaacccatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgac 14004159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 153
Target Start/End: Original strand, 17642889 - 17642991
Alignment:
Q  51 gaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgt 150  Q
    |||||||||||| || | | |||||||||| | |||| ||||  | |||||||| | |||||||||||| || |||||||||||||| ||||||  ||||    
T  17642889 gaaactcacatcactcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctctctcacttgt 17642988  T
Q  151 tcc 153  Q
    |||    
T  17642989 tcc 17642991  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 21236203 - 21236154
Alignment:
Q  104 tgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 153  Q
    ||||||| ||||||||||| | ||||||||||||||||||| ||||||||    
T  21236203 tgcgagcattctcccaaaatactacaactttgacatctctcaattgttcc 21236154  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 153
Target Start/End: Original strand, 17635632 - 17635712
Alignment:
Q  73 tccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 153  Q
    |||||||||| |||| ||||  | |||||||| |||||||||||||  || |||||||||||||| ||||||  |||||||    
T  17635632 tccaaccaactcaccattccaactaatgggttacgagctttctcccggaatattacaactttgacctctctcacttgttcc 17635712  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 32152013 - 32151977
Alignment:
Q  108 agctttctcccaaaacattacaactttgacatctctc 144  Q
    |||||||||||||||||||||||||||||| ||||||    
T  32152013 agctttctcccaaaacattacaactttgacctctctc 32151977  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 28246056 - 28246105
Alignment:
Q  95 caaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 144  Q
    |||||||||||| ||||||||| |||||||||| |||||| || ||||||    
T  28246056 caaatgggttgcaagctttctctcaaaacattaaaactttaacctctctc 28246105  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 34935986 - 34936031
Alignment:
Q  96 aaatgggttgcgagctttctcccaaaacattacaactttgacatct 141  Q
    |||||| ||||||| |||||| ||||| ||||||||||||||||||    
T  34935986 aaatggtttgcgagttttctcacaaaatattacaactttgacatct 34936031  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 1036620 - 1036669
Alignment:
Q  106 cgagctttctcccaaaacattacaactttgacatctctcgattgttccaa 155  Q
    ||||||||||||||||| |||||||||||||| ||||||  |||||||||    
T  1036620 cgagctttctcccaaaatattacaactttgacttctctcatttgttccaa 1036669  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 28532872 - 28532829
Alignment:
Q  94 gcaaatgggttgcgagctttctcccaaaacattacaactttgac 137  Q
    |||||||| ||||||||||| || ||||||||||||||||||||    
T  28532872 gcaaatggattgcgagctttttcacaaaacattacaactttgac 28532829  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 28661184 - 28661240
Alignment:
Q  87 ctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctct 143  Q
    |||||| ||| |||| ||| ||||||||  ||||||||||||||||||||| |||||    
T  28661184 ctttcccgcacatggtttgggagctttcagccaaaacattacaactttgacctctct 28661240  T

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