View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3132_high_3 (Length: 258)
Name: NF3132_high_3
Description: NF3132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3132_high_3 |
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| [»] chr8 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 9439687 - 9439944
Alignment:
| Q |
1 |
ttgtgttgttactgatttgggatgctgaacaatgattcacggctagctatttataggagcaaaatccattgcctcaacaacttgcatttaaggcaccatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9439687 |
ttgtgttgttactgatttgggatgctgaacaatgattcacggctagctatttataggagcaaaatccattgcctcaacaacttgcatttaaggcaccatg |
9439786 |
T |
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| Q |
101 |
gactttagaacaacaaccaaccaattttgttgacaatagtgcaccgaaaaattactttcaaagacaaagtcatattgtccacatgtttttactgccatgc |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9439787 |
gactttagaacaacaaccaacctattttgttgacaatagtgcaccgaaaaattactttcaaagacaaagtcatattgtccacatgattttactgccatgc |
9439886 |
T |
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| Q |
201 |
atgctgtaacaattcaacaaaatgtggctttacttgttcacacatgttcacaatctcc |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9439887 |
atgctgtaacaattcaacaaaatgtggctttacttgttcacacatgttcacaatctcc |
9439944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 9444407 - 9444658
Alignment:
| Q |
1 |
ttgtgttgttactgatttgggatgctgaacaatgattcacggctagctatttataggagcaaaatccattgcctcaacaacttgcatttaaggcaccatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9444407 |
ttgtgttgttactgatttgggatgctgaacaatgattcacggctagctatttataggagcaaaatccattgcctcaacaacttgcatttaaggcaccatg |
9444506 |
T |
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| Q |
101 |
gactttagaacaacaaccaaccaattttgttgacaatagtgcaccgaaaaattactttcaaagacaaagtcatattgtccacatgtttttactgccatgc |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9444507 |
gactttagaacaacaaccaacctattttgttgacaatagtgcaccgaaaaattactttcaaagacaaagtcatattgtccacatgattttactgccatgc |
9444606 |
T |
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| Q |
201 |
atgctgtaacaattcaacaaaatgtggctttacttgttcacacatgttcaca |
252 |
Q |
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| T |
9444607 |
atgctgtaacaattcaacaaaatgtggctttacttgttcacacatgttcaca |
9444658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 27874305 - 27874562
Alignment:
| Q |
1 |
ttgtgttgttactgatttgggatgctgaacaatgattcacggctagctatttataggagcaaaatccattgcctcaacaacttgcatttaaggcaccatg |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27874305 |
ttgtgttgttactgatttgggatactgaacaatgattcacggctagctatttataggagcaaaatccattgcctcaacaacttgcatttaaggcaccatg |
27874404 |
T |
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| Q |
101 |
gactttagaacaacaaccaaccaattttgttgacaatagtgcaccgaaaaattactttcaaagacaaagtcatattgtccacatgtttttactgccatgc |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27874405 |
gactttagaacaacaaccaacctattttgttgacaatagtgcaccgaaaaattactttcaaagacaaagtcatattgtccacatgtttttactgccatgc |
27874504 |
T |
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| Q |
201 |
atgctgtaacaattcaacaaaatgtggctttacttgttcacacatgttcacaatctcc |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27874505 |
atgctgtaacaattcaacaaaatgtggctttacttgttcacacatgttcacaatctcc |
27874562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 42270624 - 42270367
Alignment:
| Q |
1 |
ttgtgttgttactgatttgggatgctgaacaatgattcacggctagctatttataggagcaaaatccattgcctcaacaacttgcatttaaggcaccatg |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42270624 |
ttgtgttgttactgatttgggatactgaacaatgattcacggctagctatttataggagcaaaatccattgcctcaacaacttgcatttaaggcaccatg |
42270525 |
T |
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| Q |
101 |
gactttagaacaacaaccaaccaattttgttgacaatagtgcaccgaaaaattactttcaaagacaaagtcatattgtccacatgtttttactgccatgc |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42270524 |
gactttagaacaacaaccaacctattttgttgacaatagtgcaccgaaaaattactttcaaagacaaagtcatattgtccacatgtttttactgccatgc |
42270425 |
T |
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| Q |
201 |
atgctgtaacaattcaacaaaatgtggctttacttgttcacacatgttcacaatctcc |
258 |
Q |
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| T |
42270424 |
atgctgtaacaattcaacaaaatgtggctttacttgttcacacatgttcacaatctcc |
42270367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 42265905 - 42265653
Alignment:
| Q |
1 |
ttgtgttgttactgatttgggatgctgaacaatgattcacggctagctatttataggagcaaaatccattgcctcaacaacttgcatttaaggcaccatg |
100 |
Q |
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|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42265905 |
ttgtgttgttactgatttgggatactgaacaatgattcacggctagctatttataggagcaaaatccattgcctcaacaacttgcatttaaggcaccatg |
42265806 |
T |
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| Q |
101 |
gactttagaacaacaaccaaccaattttgttgacaatagtgcaccgaaaaattactttcaaagacaaagtcatattgtccacatgtttttactgccatgc |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42265805 |
gactttagaacaacaaccaacctattttgttgacaatagtgcaccgaaaaattactttcaaagacaaagtcatattgtccacatgtttttactgccatgc |
42265706 |
T |
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| Q |
201 |
atgctgtaacaattcaacaaaatgtggctttacttgttcacacatgttcacaa |
253 |
Q |
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| T |
42265705 |
atgctgtaacaattcaacaaaatgtggctttacttgttcacacatgttcacaa |
42265653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 54545860 - 54545609
Alignment:
| Q |
7 |
tgttactgatttgggatgctgaacaatgattcacggctagctatttataggagcaaaatccattgcctcaacaacttgcatttaaggcaccatggacttt |
106 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54545860 |
tgttactgatttgggatgatgaacaatgattcacggctagctatttataggagcaaaatccattgcctcaacaacttgcatttaaggcaccatggacttt |
54545761 |
T |
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| Q |
107 |
agaacaacaaccaaccaattttgttgacaatagtgcaccgaaaaattactttcaaagacaaagtcatattgtccacatgtttttactgccatgcatgctg |
206 |
Q |
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| T |
54545760 |
agaacaacaaccaaccaattttgttgacaatagtgcaccgaaaaattactttcaaagacaaagtcatattatccacatgtttttactgccatgcatgctg |
54545661 |
T |
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| Q |
207 |
taacaattcaacaaaatgtggctttacttgttcacacatgttcacaatctcc |
258 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54545660 |
taagaattcaacaaaatgtggctttacttgttcacacatgttcacaatctcc |
54545609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 34614276 - 34614322
Alignment:
| Q |
208 |
aacaattcaacaaaatgtggctttacttgttcacacatgttcacaat |
254 |
Q |
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||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
34614276 |
aacaattcaacaaaaggtggctttacgaattcacacatgttcacaat |
34614322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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