View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3132_low_1 (Length: 627)
Name: NF3132_low_1
Description: NF3132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3132_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 533; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 19 - 616
Target Start/End: Original strand, 3528141 - 3528734
Alignment:
| Q |
19 |
aatagaccattagccaaaagagagtacatcaaaaatttgtgtaacccttttaatagtaatatagatagagtagtagtgtattatatactagctagatgat |
118 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3528141 |
aatacaccattagccaaaagagagtacatcaaaaatttgtgtaacccttttaatagtaatatagatagagtagtagtgtattatatactag----atgat |
3528236 |
T |
|
| Q |
119 |
tgataaaatgaacagttaacctagaaattaaattttacatttgttatagaagagaaagaaataatgttttatatgtacctgagattttcctttgacacga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3528237 |
tgataaaatgaacagttaacctagaaattaaattttacatttgttatagaagagaaagaaataatgttttatatatacctgagattttcctttgacacgg |
3528336 |
T |
|
| Q |
219 |
ttggaaacattagaaagtccttgtagccattcttcggggttgaaatattggtcaccaaagaatccattcccatcattattgtcacaacaccatttaggat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3528337 |
ttggaaacattagaaagtccttgtagccattcttcggggttgaaatattggtcaccaaagaatccattcccatcattattgtcacaacaccattttggat |
3528436 |
T |
|
| Q |
319 |
cactaacatgattatcagccaaaaccatcataccttgttttccaaactcatcaatcacgttatcaaatgcttccacaacggtaatgttctcgaaagaagg |
418 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3528437 |
cgctaacatgattatcagccaaaaccatcataccttgtctcccaaactcatcaatcacgttatcaaatgcttccacaacggtaatgttctcgaaagaagg |
3528536 |
T |
|
| Q |
419 |
gttatgaaaacggattcctaacctagaactagtgaggtttagtttgtctaaattttctccaactttataatttgagtaacgtgtgaacatttctgttgcc |
518 |
Q |
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| T |
3528537 |
gttataaaaacgaattcctaacctagaactagtgaggtttagtttgtctaaattttctccaactttataatttgagtagcgtgtgaacatttttgttgcc |
3528636 |
T |
|
| Q |
519 |
catgtgtatctaacacaatcaaaccctaatcccttcaattgggttataacatcttttaaaggtattgtttcaagaccttcagctaccattgcattcat |
616 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3528637 |
catgtgtatctaacacaatcaaaccctaatcccttcaattgggttataatatcttttaaaggtattgtttcaagaccttcagctaccattgcattcat |
3528734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 134 - 610
Target Start/End: Original strand, 3534699 - 3535176
Alignment:
| Q |
134 |
ttaacctagaaattaaatttt-acatttgttatagaagagaaagaaataatgttttatatgtacctgagattttcctttgacacgattggaaacattaga |
232 |
Q |
| |
|
|||||||||| ||||| |||| |||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3534699 |
ttaacctagagattaactttttacatttcttatagaagaaaaataaataatgttttatatgtacctgagattttcctttgacacgattggcaacattaga |
3534798 |
T |
|
| Q |
233 |
aagtccttgtagccattcttcggggttgaaatattggtcaccaaagaatccattcccatcattattgtcacaacaccatttaggatcactaacatgatta |
332 |
Q |
| |
|
||||||||||| |||||| | |||| | ||||||| |||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
3534799 |
aagtccttgtaaccattcctttgggtcggaatattgatcaccaaaaaatccattcccatctttattgtgacaacaccatttaggatcactaacatgatta |
3534898 |
T |
|
| Q |
333 |
tcagccaaaaccatcataccttgttttccaaactcatcaatcacgttatcaaatgcttccacaacggtaatgttctcgaaagaagggttatgaaaacgga |
432 |
Q |
| |
|
||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||| ||||| |||||||||||| | | | |
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| T |
3534899 |
tcaaccaaaaccatcataccttgtttcccaaactcatcaatcacaaaatcaaatgcttccacaacagtaatattctccaaagaagggttaaaattcccaa |
3534998 |
T |
|
| Q |
433 |
ttcctaacctagaactagtgaggtttagtttgtctaaattttctccaactttataatttgagtaacgtgtgaacatttctgttgcccatgtgtatctaac |
532 |
Q |
| |
|
|||||||||||||||| ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
3534999 |
ttcctaacctagaactggtgagattcaatttgtctaaattttctccaactttataatttgagtaacgtgtgaacatatgtgttgcccatgtgtatctaac |
3535098 |
T |
|
| Q |
533 |
acaatcaaaccctaatcccttcaattgggttataacatcttttaaaggtattgtttcaagaccttcagctaccattgc |
610 |
Q |
| |
|
|||||||||||||||| |||||||||| | ||| | ||||||||| ||| || | ||||||||||||||||||||||| |
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|
| T |
3535099 |
acaatcaaaccctaattccttcaattgagctatgagatcttttaagggttttatctcaagaccttcagctaccattgc |
3535176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 195 - 616
Target Start/End: Original strand, 3550471 - 3550892
Alignment:
| Q |
195 |
acctgagattttcctttgacacgattggaaacattagaaagtccttgtagccattcttcggggttgaaatattggtcaccaaagaatccattcccatcat |
294 |
Q |
| |
|
||||||| ||||||||||||||| |||| ||||| ||||||||||||| ||||||||| |||| ||||||||||||||||| ||||||| ||||||| |
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|
| T |
3550471 |
acctgaggttttcctttgacacggttggccacattggaaagtccttgtaaccattcttctaggttaaaatattggtcaccaaaacatccatttccatcat |
3550570 |
T |
|
| Q |
295 |
tattgtcacaacaccatttaggatcactaacatgattatcagccaaaaccatcataccttgttttccaaactcatcaatcacgttatcaaatgcttccac |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| |||||||| |
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|
| T |
3550571 |
tattgtcacaacaccatttaggatcactaacatgattatcagccaaaaccatcataccttgttttccaaattcatcaaccacaaaatcaaaggcttccac |
3550670 |
T |
|
| Q |
395 |
aacggtaatgttctcgaaagaagggttatgaaaacggattcctaacctagaactagtgaggtttagtttgtctaaattttctccaactttataatttgag |
494 |
Q |
| |
|
||| |||||| |||| ||||| |||||| | | ||||||||||||||||||||||| || | |||||| ||||||||||||||||||||||||||| |
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| T |
3550671 |
aacagtaatgctctccaaagatgggttaaaatttccaattcctaacctagaactagtgagattcaatttgtccaaattttctccaactttataatttgag |
3550770 |
T |
|
| Q |
495 |
taacgtgtgaacatttctgttgcccatgtgtatctaacacaatcaaaccctaatcccttcaattgggttataacatcttttaaaggtattgtttcaagac |
594 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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|
| T |
3550771 |
taacgtgtgaacatatatgttgcccatgtgtatctaacacaatcaaaccctaatcccttcaattgggctataacatcttttaaaggtattgcgtcaagac |
3550870 |
T |
|
| Q |
595 |
cttcagctaccattgcattcat |
616 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
3550871 |
cttcagctaccattgcattcat |
3550892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 188 - 616
Target Start/End: Original strand, 3555846 - 3556274
Alignment:
| Q |
188 |
tatatgtacctgagattttcctttgacacgattggaaacattagaaagtccttgtagccattcttcggggttgaaatattggtcaccaaagaatccattc |
287 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||| | |||||||||||||||||||| ||||||||| || || |||||||| |||||||||||||||||| |
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|
| T |
3555846 |
tatatgaacctgaggttttcctttgacacgattagcaacattagaaagtccttgtaaccattcttctggattaaaatattgatcaccaaagaatccattc |
3555945 |
T |
|
| Q |
288 |
ccatcattattgtcacaacaccatttaggatcactaacatgattatcagccaaaaccatcataccttgttttccaaactcatcaatcacgttatcaaatg |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| | |
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|
| T |
3555946 |
ccatcattattgtcacaacaccatttaggatcactaacatgattatcagccaaaaccatcataccttgttttccaaattcatcaatcacaaaatcaaaag |
3556045 |
T |
|
| Q |
388 |
cttccacaacggtaatgttctcgaaagaagggttatgaaaacggattcctaacctagaactagtgaggtttagtttgtctaaattttctccaactttata |
487 |
Q |
| |
|
| |||||||| ||||| ||||| | |||||||||| | | ||||||||||||| || |||||| || | ||| || || |||||||||||||||| |
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|
| T |
3556046 |
cctccacaacagtaatattctccatagaagggttaaaattcccaattcctaacctaggaccagtgagattcaatttatccaacttttctccaactttatt |
3556145 |
T |
|
| Q |
488 |
atttgagtaacgtgtgaacatttctgttgcccatgtgtatctaacacaatcaaaccctaatcccttcaattgggttataacatcttttaaaggtattgtt |
587 |
Q |
| |
|
||||||||||||| ||||| | |||||||||||| ||||| ||||||| ||||||||||||||| ||||| | |||| |||||||||||||||||| |
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|
| T |
3556146 |
tgttgagtaacgtgtaaacatatgtgttgcccatgtatatcttacacaattaaaccctaatccctttaattgagctatacaatcttttaaaggtattgtg |
3556245 |
T |
|
| Q |
588 |
tcaagaccttcagctaccattgcattcat |
616 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
3556246 |
tcaagaccttcagctaccattgcattcat |
3556274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 3534538 - 3534586
Alignment:
| Q |
47 |
tcaaaaatttgtgtaacccttttaatagtaatatagatagagtagtagt |
95 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3534538 |
tcaaaaatttgtgtaacccttttattagtaatatagatagagtagtagt |
3534586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 3534626 - 3534662
Alignment:
| Q |
111 |
tagatgattgataaaatgaacagttaacctagaaatt |
147 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
3534626 |
tagatgattgataaaaagaacaattaacctagaaatt |
3534662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 344
Target Start/End: Complemental strand, 10764473 - 10764404
Alignment:
| Q |
275 |
aaagaatccattcccatcattattgtcacaacaccatttaggatcactaacatgattatcagccaaaacc |
344 |
Q |
| |
|
|||||| |||||| |||||| || | ||||||||| ||||| |||||||||||||||||| ||||||| |
|
|
| T |
10764473 |
aaagaaaccattctcatcatcatcatgacaacaccacttaggctcactaacatgattatcaagcaaaacc |
10764404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 335
Target Start/End: Complemental strand, 38324958 - 38324925
Alignment:
| Q |
302 |
acaacaccatttaggatcactaacatgattatca |
335 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
38324958 |
acaacaccatttaggctcactaacatgattatca |
38324925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 36305214 - 36305254
Alignment:
| Q |
270 |
tcaccaaagaatccattcccatcattattgtcacaacacca |
310 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
36305214 |
tcaccaaagaatccattctgatcattattatcacaacacca |
36305254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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