View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3132_low_2 (Length: 516)
Name: NF3132_low_2
Description: NF3132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3132_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 398
Target Start/End: Original strand, 51905218 - 51905599
Alignment:
| Q |
18 |
atgaattgctctgtccgtgctcctcgagaagccaatttgttcgtatcatgataggtttgcccaagcaatttatcttttagttgtgtgtgcatgttgataa |
117 |
Q |
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| T |
51905218 |
atgaattgctctgtccgtgctcctcgagaagccaatttgttcgtatcatgataggtttgcccaagcaatttatcttttagttctgtgtgcatgttgataa |
51905317 |
T |
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| Q |
118 |
ccgttgatgcatattcaacataaggaaatttgatcggacatttaagtgaacaattttaaagagtatgaaggcaagaatcattcaagagtctataaagttt |
217 |
Q |
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| T |
51905318 |
ccgttgatgcatattcaacataaggaaatttgatcggacatttaagtgaacaattttaaagagtatgaaggcaagaatcattcaagagtctataaagttt |
51905417 |
T |
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| Q |
218 |
gcaagaagaatccattgtaagatgtctggacatacaaaacaagttcttaagtagaacctaac-aaataaaccaaccaaaatacttaatattttcaagaat |
316 |
Q |
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| T |
51905418 |
gcaagaagaatccattgtaagatgtctggacatacaaaacaagttcttaagtagaacctaacaaaataaaccaaccaaaatacttaatattttcaagaat |
51905517 |
T |
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| Q |
317 |
atcaagcttccaagccaactccaagagttggtagtggtaacatttgaatgagaccgatttggatcggtgaggctcggatggg |
398 |
Q |
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| T |
51905518 |
atcaagcttccaagccaactccaagagttggtagtggtaacatttgaatgagaccgatttggatcggtgaggctcggatggg |
51905599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 432 - 507
Target Start/End: Original strand, 51905636 - 51905711
Alignment:
| Q |
432 |
ttaacagggagtttactaaaatattcttaatttttaaatagaattactttttgtctcaccctattcttcttcatct |
507 |
Q |
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| T |
51905636 |
ttaacagggagtttactaaaatattcttaatttttaaatagaattactttttgtctcaccctattcttcttcatct |
51905711 |
T |
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