View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3132_low_3 (Length: 312)
Name: NF3132_low_3
Description: NF3132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3132_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 17976214 - 17975930
Alignment:
| Q |
14 |
gagtttgatcaaacatgtccgaatgaaagttcaacacatactgctttcatgactaattattattaaaaaagaaatatctcaccccttattatcgtatata |
113 |
Q |
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| T |
17976214 |
gagtttgatcaaacatgtccgaatgaaagttcaacacatactgctttgatgactaattattattaaaaaa--aataactcaccccttattatcgtatata |
17976117 |
T |
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| Q |
114 |
tgagcaattataagtaaatatcaaagtaatatttaaataacatataattcgctgcaagcatttttcttgaaggaccaaagcaaaaacaatcttagcaaaa |
213 |
Q |
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| T |
17976116 |
tgagcaattataagtaaatattaaactaatatttaaataacatataattcgctgcaagcatttttcttgaaggactgaagaaaaaacaatcttagcaaaa |
17976017 |
T |
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| Q |
214 |
agagaagttgagataaagttttattaatattaatcaatatttattctcataatttttaacat-----aacaaagaatttcaggactg |
295 |
Q |
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| T |
17976016 |
agagaagttgagataaagttttattaatattaatcaatatttattctcataatttttaacataacataacaaagaatttcaggactg |
17975930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 195 - 295
Target Start/End: Complemental strand, 17986995 - 17986899
Alignment:
| Q |
195 |
aaaaacaatcttagcaaaaagagaagttgagataaagttttattaatattaatcaatatttattctcataatttttaacataacaaagaatttcaggact |
294 |
Q |
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| T |
17986995 |
aaaaaaaaacttagcaaaaagagaagttgagataaagttt----attattaatcaatatttattctcataattttttacataacaaagaatttcaggact |
17986900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 207 - 295
Target Start/End: Complemental strand, 17983655 - 17983570
Alignment:
| Q |
207 |
agcaaaaagagaagttgagataaagttttattaatattaatcaatatttattctcataatttttaacataacaaagaatttcaggactg |
295 |
Q |
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| T |
17983655 |
agcaaaaagagaagttaagataaagttttatta---ttaatcaatatttattctcataatttttaacagaacaaagaatttcaggactg |
17983570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 108 - 187
Target Start/End: Complemental strand, 17983809 - 17983729
Alignment:
| Q |
108 |
tatatatgagcaatt-ataagtaaatatcaaagtaatatttaaataacatataattcgctgcaagcatttttcttgaagga |
187 |
Q |
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| T |
17983809 |
tatatatgagcaatttataagtaaatagtaaactaatatttaaataacaaataattcgctgcaagcatttttcttgaagga |
17983729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 96 - 187
Target Start/End: Complemental strand, 17987163 - 17987067
Alignment:
| Q |
96 |
cccttattatcgtatatatgagcaattataagtaaatatc-----aaagtaatatttaaataacatataattcgctgcaagcatttttcttgaagga |
187 |
Q |
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| T |
17987163 |
cccttattatcttatatatgagcaattataagtaaaaaaactggtaagctaatatttaaataacaaataattcgctgcaagcatttttcttgaagga |
17987067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 17987230 - 17987181
Alignment:
| Q |
15 |
agtttgatcaaacatgtccgaatgaaagttcaacacatactgctttcatg |
64 |
Q |
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| T |
17987230 |
agttttatcaaacatgtccgaatgaaagttcaaaagatactgctttcatg |
17987181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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