View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3132_low_6 (Length: 251)

Name: NF3132_low_6
Description: NF3132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3132_low_6
NF3132_low_6
[»] chr2 (2 HSPs)
chr2 (1-178)||(17976540-17976719)
chr2 (11-90)||(17984077-17984158)
[»] chr3 (8 HSPs)
chr3 (103-240)||(299923-300060)
chr3 (103-240)||(30952963-30953100)
chr3 (103-240)||(30968775-30968912)
chr3 (107-223)||(43183317-43183433)
chr3 (136-218)||(35272696-35272778)
chr3 (186-223)||(7639039-7639076)
chr3 (105-162)||(10939160-10939217)
chr3 (117-217)||(30075775-30075875)
[»] chr4 (5 HSPs)
chr4 (103-240)||(3071304-3071440)
chr4 (107-240)||(50650277-50650411)
chr4 (117-231)||(40388654-40388768)
chr4 (184-223)||(13159854-13159893)
chr4 (107-224)||(13531351-13531467)
[»] chr8 (1 HSPs)
chr8 (104-240)||(33154771-33154907)
[»] chr1 (6 HSPs)
chr1 (107-240)||(37095126-37095259)
chr1 (137-218)||(49907554-49907635)
chr1 (107-199)||(36011751-36011843)
chr1 (184-223)||(8303905-8303944)
chr1 (184-219)||(33567304-33567339)
chr1 (169-217)||(13260597-13260645)
[»] chr5 (3 HSPs)
chr5 (118-218)||(3170496-3170597)
chr5 (179-223)||(21270033-21270077)
chr5 (179-223)||(21272047-21272091)
[»] chr7 (3 HSPs)
chr7 (113-199)||(4105718-4105804)
chr7 (184-223)||(43656009-43656048)
chr7 (107-224)||(9660327-9660443)
[»] chr6 (4 HSPs)
chr6 (140-226)||(11651060-11651146)
chr6 (110-199)||(8934350-8934439)
chr6 (107-224)||(18575593-18575710)
chr6 (137-228)||(14236015-14236106)


Alignment Details
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 17976540 - 17976719
Alignment:
Q  1 tgtggatgtatactcaaactttggaagggaggaagggttcatat--gtgtatgaaactggttcaaagaagaaattgattgcgaagtaagatggtgtatgg 98  Q
    ||||||| | |||||||||||||||||||||| |||| ||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17976540 tgtggatatgtactcaaactttggaagggagggaggggtcatatatgtgtatgaaactggttcaaagaagaaattgattgcaaagtaagatggtgtatgg 17976639  T
Q  99 ctattcctttggtcctttttgagaaagtaaagctactatcttttttgtggttgaaagctaaacaaacatgcttttgttat 178  Q
    ||| |||||| |||||| ||||||||||||||||| | |||||||||||||||||||||||| | |||||||||||||||    
T  17976640 ctactcctttagtccttgttgagaaagtaaagctattctcttttttgtggttgaaagctaaagagacatgcttttgttat 17976719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 17984077 - 17984158
Alignment:
Q  11 tactcaaactttggaagggaggaagggttcatat--gtgtatgaaactggttcaaagaagaaattgattgcgaagtaagatg 90  Q
    |||| ||||||||||||||||| |||| ||||||  |||||||||||||||||||||| |||||||||||| ||||||||||    
T  17984077 tactgaaactttggaagggagggaggggtcatatatgtgtatgaaactggttcaaagacgaaattgattgcaaagtaagatg 17984158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 103 - 240
Target Start/End: Original strand, 299923 - 300060
Alignment:
Q  103 tcctttggtcctttttgagaaagtaaagctactatcttttttgtggttgaaagctaaacaaacatgcttttgttattgttatcatgattggtggagacat 202  Q
    ||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  299923 tcctttggtccttgttgagaaagtaaagctactctcttttttatggttgaaagctaaacaaacatgcttttgttattgctatcatgattggtggagacat 300022  T
Q  203 ccactactttgtatggatgtctactaatttttgtctgt 240  Q
    || |||| |||||||| |||| ||||||||||||||||    
T  300023 ccgctaccttgtatgggtgtccactaatttttgtctgt 300060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 103 - 240
Target Start/End: Complemental strand, 30953100 - 30952963
Alignment:
Q  103 tcctttggtcctttttgagaaagtaaagctactatcttttttgtggttgaaagctaaacaaacatgcttttgttattgttatcatgattggtggagacat 202  Q
    ||||||||||||||||||||||||| |  |||| |||||||||||||||||||||||||| |||| |||||  ||||||| | |||||||||||||||||    
T  30953100 tcctttggtcctttttgagaaagtacaattactctcttttttgtggttgaaagctaaacagacatccttttactattgttttaatgattggtggagacat 30953001  T
Q  203 ccactactttgtatggatgtctactaatttttgtctgt 240  Q
    || |||| |||||||| |||| ||| ||||||||||||    
T  30953000 ccgctaccttgtatgggtgtccactgatttttgtctgt 30952963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 103 - 240
Target Start/End: Complemental strand, 30968912 - 30968775
Alignment:
Q  103 tcctttggtcctttttgagaaagtaaagctactatcttttttgtggttgaaagctaaacaaacatgcttttgttattgttatcatgattggtggagacat 202  Q
    ||||||||||||||||||||||||| |  |||| |||||||||||||||||||||||||| |||| |||||  ||||||| | |||||||||||||||||    
T  30968912 tcctttggtcctttttgagaaagtacaattactctcttttttgtggttgaaagctaaacagacatccttttactattgttttaatgattggtggagacat 30968813  T
Q  203 ccactactttgtatggatgtctactaatttttgtctgt 240  Q
    || |||| |||||||| |||| ||| ||||||||||||    
T  30968812 ccgctaccttgtatgggtgtccactgatttttgtctgt 30968775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 43183317 - 43183433
Alignment:
Q  107 ttggtcctttttgagaaagtaaagctactatcttttttgtggttgaaagctaaacaaacatgcttttgttattgttatcatgattggtggagacatccac 206  Q
    |||||||||||||||| ||| ||| |||| ||||||||||||||||||||||||||  ||| ||||| ||||||||||| || ||||||||| ||||| |    
T  43183317 ttggtcctttttgagagagtcaagttactttcttttttgtggttgaaagctaaacatgcatccttttattattgttatcgtgcttggtggaggcatccgc 43183416  T
Q  207 tactttgtatggatgtc 223  Q
    ||  |||||||||||||    
T  43183417 tatcttgtatggatgtc 43183433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 35272778 - 35272696
Alignment:
Q  136 atcttttttgtggttgaaagctaaacaaacatgcttttgttattgttatcatgattggtggagacatccactactttgtatgg 218  Q
    ||||||||||||| ||||||  |||||| ||| ||||  |||| ||||| |||||||||||| ||| ||  ||||||||||||    
T  35272778 atcttttttgtgggtgaaagtcaaacaaccatcctttatttatagttattatgattggtggaaacacccgttactttgtatgg 35272696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 7639076 - 7639039
Alignment:
Q  186 atgattggtggagacatccactactttgtatggatgtc 223  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  7639076 atgattggtggagacatccattactttgtttggatgtc 7639039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 10939217 - 10939160
Alignment:
Q  105 ctttggtcctttttgagaaagtaaagctactatcttttttgtggttgaaagctaaaca 162  Q
    ||||||| ||||| |||||||| ||| ||||||||||| ||||| ||||||| |||||    
T  10939217 ctttggttcttttagagaaagtcaagttactatcttttctgtggctgaaagcaaaaca 10939160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 30075875 - 30075775
Alignment:
Q  117 ttgagaaagtaaagctactatcttttttgtggttgaaagctaaacaaacatgcttttgttattgttatcatgattggtggagacatccactactttgtat 216  Q
    |||||||||| ||||||   || ||| ||||||||||||  | |||| | | ||||  || |||||||||||||||||||| |||||| || ||||||||    
T  30075875 ttgagaaagtcaagctaaattcatttatgtggttgaaagtaagacaagcgtcctttaatttttgttatcatgattggtggaaacatccgctcctttgtat 30075776  T
Q  217 g 217  Q
    |    
T  30075775 g 30075775  T

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Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 103 - 240
Target Start/End: Original strand, 3071304 - 3071440
Alignment:
Q  103 tcctttggtcctttttgagaaagtaaagctactatcttttttgtggttgaaagctaaacaaacatgcttttgttattgttatcatgattggtggagacat 202  Q
    |||||||||||||||||||||||||||||| || |||||||| ||||||||||  |||||||||| |||||||||||||||||||||||||||||||| |    
T  3071304 tcctttggtcctttttgagaaagtaaagcttctctcttttttttggttgaaagtcaaacaaacatccttttgttattgttatcatgattggtggagacct 3071403  T
Q  203 ccactactttgtatggatgtctactaatttttgtctgt 240  Q
    || |||| ||| |||| || | ||||||||||||||||    
T  3071404 ccgctaccttg-atgggtgccaactaatttttgtctgt 3071440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 107 - 240
Target Start/End: Original strand, 50650277 - 50650411
Alignment:
Q  107 ttggtcctttttgagaaagtaaagctactatcttttttgtggttgaaagctaaacaaacatgc-ttttgttattgttatcatgattggtggagacatcca 205  Q
    ||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| ||| | |||| ||| |||||||||||| ||||||||||||      
T  50650277 ttggtccttattgagaaagtaaagttactctcttttttgtggttgaaagctaaacaagcatccttttttttactgttatcatgataggtggagacatctg 50650376  T
Q  206 ctactttgtatggatgtctactaatttttgtctgt 240  Q
    |||| ||| ||||  ||| ||| |||| |||||||    
T  50650377 ctaccttgcatgggggtccactgatttatgtctgt 50650411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 231
Target Start/End: Complemental strand, 40388768 - 40388654
Alignment:
Q  117 ttgagaaagtaaagctactatcttttttgtggttgaaagctaaacaaacatgcttttgttattgttatcatgattggtggagacatccactactttgtat 216  Q
    |||||||||  ||| |||| || ||||||||||||||||| |||||| | |  |||  ||| ||||||||||||||||||| |||||| |||||||||||    
T  40388768 ttgagaaagccaagttactctcatttttgtggttgaaagcaaaacaagcgtcttttatttactgttatcatgattggtggaaacatccgctactttgtat 40388669  T
Q  217 ggatgtctactaatt 231  Q
    ||||||| |||||||    
T  40388668 ggatgtccactaatt 40388654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 13159893 - 13159854
Alignment:
Q  184 tcatgattggtggagacatccactactttgtatggatgtc 223  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  13159893 tcatgattggtggagacatccattactttgtttggatgtc 13159854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 13531467 - 13531351
Alignment:
Q  107 ttggtcctttttgagaaagtaaagctactatcttttttgtggttgaaagctaaacaaacatgcttttgttattgttatcatgattggtggagacatccac 206  Q
    ||||||||||| |||||||  ||| || ||||||| | |||| | |||||||||||| | |  |||  ||||||||||||||||||||||||| | || |    
T  13531467 ttggtccttttagagaaaggcaagttattatctttat-gtggcttaaagctaaacaagcttcttttcattattgttatcatgattggtggagatacccgc 13531369  T
Q  207 tactttgtatggatgtct 224  Q
    | | |||||||| |||||    
T  13531368 tgccttgtatgggtgtct 13531351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 33154771 - 33154907
Alignment:
Q  104 cctttggtcctttttgagaaagtaaagctactatcttttttgtggttgaaagctaaacaaacatgcttttgttattgttatcatgattggtggagacatc 203  Q
    ||||||| |||| |||| ||||| ||| |||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  33154771 cctttgggccttcttgaaaaagttaagttactctcttttttgtggttgaaagctaaacagacatccttttgttattgttatcatgattggtggagacatc 33154870  T
Q  204 cactactttgtatggatgtctactaatttttgtctgt 240  Q
    ||||   |||||||| |||| ||| ||||||||||||    
T  33154871 cactttcttgtatgggtgtccactgatttttgtctgt 33154907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 107 - 240
Target Start/End: Complemental strand, 37095259 - 37095126
Alignment:
Q  107 ttggtcctttttgagaaagtaaagctactatcttttttgtggttgaaagctaaacaaacatgcttttgttattgttatcatgattggtggagacatccac 206  Q
    |||||||||||||||| ||| ||| |||| |||||||||| ||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| |    
T  37095259 ttggtcctttttgagagagtcaagttactttcttttttgtcgttgaaagctaaacatacatccttttattattgttatcatgattggtggagacatccgc 37095160  T
Q  207 tactttgtatggatgtctactaatttttgtctgt 240  Q
    ||  |||||||| |||| ||| |||  |||||||    
T  37095159 tatcttgtatgggtgtccactgattgatgtctgt 37095126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 49907554 - 49907635
Alignment:
Q  137 tcttttttgtggttgaaagctaaacaaacatgcttttgttattgttatcatgattggtggagacatccactactttgtatgg 218  Q
    |||||| ||||||||||||| ||||| |||| ||||  ||| |||||||||||||||||||||||| | ||||||| |||||    
T  49907554 tcttttctgtggttgaaagcaaaacatacatcctttaattactgttatcatgattggtggagacattcgctactttatatgg 49907635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 199
Target Start/End: Complemental strand, 36011843 - 36011751
Alignment:
Q  107 ttggtcctttttgagaaagtaaagctactatcttttttgtggttgaaagctaaacaaacatgcttttgttattgttatcatgattggtggaga 199  Q
    ||||| ||||| |||||||| |||||| |||||||| ||||| | |||||||| ||| | |  |||  |||||||||||||||||||||||||    
T  36011843 ttggttcttttagagaaagtcaagctattatcttttctgtggcttaaagctaatcaagcttcttttcattattgttatcatgattggtggaga 36011751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 8303944 - 8303905
Alignment:
Q  184 tcatgattggtggagacatccactactttgtatggatgtc 223  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  8303944 tcatgattggtggagacatccactcctttatatggatgtc 8303905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 33567339 - 33567304
Alignment:
Q  184 tcatgattggtggagacatccactactttgtatgga 219  Q
    |||||||||||||||||||||||| |||||||||||    
T  33567339 tcatgattggtggagacatccactcctttgtatgga 33567304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 13260645 - 13260597
Alignment:
Q  169 cttttgttattgttatcatgattggtggagacatccactactttgtatg 217  Q
    |||| |||||||||||||||||| ||| | ||||||||| |||||||||    
T  13260645 ctttagttattgttatcatgattagtgaaaacatccactcctttgtatg 13260597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 218
Target Start/End: Original strand, 3170496 - 3170597
Alignment:
Q  118 tgagaaagtaaagctactatcttttt-tgtggttgaaagctaaacaaacatgcttttgttattgttatcatgattggtggagacatccactactttgtat 216  Q
    |||||||||||| || || ||||||| |||||||||||||||||||  ||| ||||||| ||| |||||| |||||||||| |||||| |||| ||||||    
T  3170496 tgagaaagtaaaacttctctctttttgtgtggttgaaagctaaacatgcatccttttgtcattattatcaagattggtggaaacatccgctaccttgtat 3170595  T
Q  217 gg 218  Q
    ||    
T  3170596 gg 3170597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 21270077 - 21270033
Alignment:
Q  179 tgttatcatgattggtggagacatccactactttgtatggatgtc 223  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||    
T  21270077 tgttatcatgattggtggcgacatccactactttgtatgggtgtc 21270033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 21272091 - 21272047
Alignment:
Q  179 tgttatcatgattggtggagacatccactactttgtatggatgtc 223  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||    
T  21272091 tgttatcatgattggtggcgacatccactactttgtatgggtgtc 21272047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 4105804 - 4105718
Alignment:
Q  113 ctttttgagaaagtaaagctactatcttttttgtggttgaaagctaaacaaacatgcttttgttattgttatcatgattggtggaga 199  Q
    ||||| |||||||| |||||| |||||||||||||| | |||||||| ||| | |  |||  |||||||||||||||||||||||||    
T  4105804 cttttagagaaagtcaagctattatcttttttgtggcttaaagctaatcaagcttcttttcattattgttatcatgattggtggaga 4105718  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 43656009 - 43656048
Alignment:
Q  184 tcatgattggtggagacatccactactttgtatggatgtc 223  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  43656009 tcatgattggtggagacatccactcctttgtatgggtgtc 43656048  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 9660443 - 9660327
Alignment:
Q  107 ttggtcctttttgagaaagtaaagctactatcttttttgtggttgaaagctaaacaaacatgcttttgttattgttatcatgattggtggagacatccac 206  Q
    ||||||||||| |||||||  ||| || ||||||| | |||| | |||||||||||| | |  |||  ||||||||||||||||||||||||| | || |    
T  9660443 ttggtccttttagagaaaggcaagttattatctttat-gtggcttaaagctaaacaagcttcttttcattattgttatcatgattggtggagatacccgc 9660345  T
Q  207 tactttgtatggatgtct 224  Q
    | | |||||||| |||||    
T  9660344 tgccttgtatgggtgtct 9660327  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 226
Target Start/End: Complemental strand, 11651146 - 11651060
Alignment:
Q  140 tttttgtggttgaaagctaaacaaacatgcttttgttattgttatcatgattggtggagacatccactactttgtatggatgtctac 226  Q
    ||||||||||||||||| |||||  | | ||||  ||| ||||||||||| ||||||| |||||| |||| |||||||| |||||||    
T  11651146 tttttgtggttgaaagcaaaacaggcgtcctttaattactgttatcatgactggtggaaacatcctctaccttgtatgggtgtctac 11651060  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 8934350 - 8934439
Alignment:
Q  110 gtcctttttgagaaagtaaagctactatcttttttgtggttgaaagctaaacaaacatgcttttgttattgttatcatgattggtggaga 199  Q
    |||||||| |||||||| ||| || |||||||| ||||| | |||||||||||| | |  |||  || ||||||||||||||||||||||    
T  8934350 gtccttttagagaaagtcaagttattatcttttctgtggcttaaagctaaacaagcttcttttcatttttgttatcatgattggtggaga 8934439  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 224
Target Start/End: Original strand, 18575593 - 18575710
Alignment:
Q  107 ttggtcctttttgagaaagtaaagctactatcttttttgtggttgaaagctaaacaaacatgcttttgttattgttatcatgattggtggagacatccac 206  Q
    ||||||||||| |||||||| ||| || |||||||  ||||| | |||||||||||| | |  |||  |||||||||| |||||||||||||| |||  |    
T  18575593 ttggtccttttagagaaagtcaagttattatctttcatgtggctaaaagctaaacaagcttcttttcattattgttatgatgattggtggagatatcagc 18575692  T
Q  207 tactttgtatggatgtct 224  Q
    | | |||||||| |||||    
T  18575693 tgccttgtatgggtgtct 18575710  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 14236015 - 14236106
Alignment:
Q  137 tcttttttgtggttgaaagctaaacaaacatgcttttgttattgttatcatgattggtggagacatccactactttgtatggatgtctacta 228  Q
    |||||||||||||||||||  ||||| |||| | ||  ||||||||||||||  ||||||| ||| || |||| |||||||| ||| |||||    
T  14236015 tcttttttgtggttgaaagtaaaacagacatcccttaattattgttatcatggctggtggaaacacccgctaccttgtatgggtgtttacta 14236106  T

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