View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3133_high_5 (Length: 415)
Name: NF3133_high_5
Description: NF3133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3133_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 8 - 399
Target Start/End: Original strand, 28784017 - 28784401
Alignment:
| Q |
8 |
tgagatgaacggcaaagattgagaactgtgtaaaactgcgtgctgttattacagtatcaaaacctggtccctttaaactaaggacaaaagtgtgaggctt |
107 |
Q |
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| T |
28784017 |
tgagatgaacggcagagattgagaactgtgtaaaactgcgtgctattattagagtatc------tggtccctttaaactaaggacaaaagtgtgaggctt |
28784110 |
T |
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| Q |
108 |
atacaatgatcaaaatgaacaatacatnnnnnnnnnnnnnnnnnnnggttgcgtactagagttggcatgtcaggtagggcctaagctacaagcatttatc |
207 |
Q |
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| T |
28784111 |
atacaatgatcaaaatgaacaatacataaaaaataaaaataaaaa-ggttgcgtactagagttggcatgtcaggtagggcctaagctacaagcatttatc |
28784209 |
T |
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| Q |
208 |
cctttagcctcgaatgagggtatgttgttcacttgttctgatacaacaaaaaagtctcttattttttgagaaatcgaggctagggtagcttatatataaa |
307 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28784210 |
cctttagcctcgaatgaggatatgttgttcacttgttctgatacaacaaaaaagtctcttattttttgagaaatcgaggctagggtagcttatatataaa |
28784309 |
T |
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| Q |
308 |
cacatacaaaccactacccattacaaaggacaaaacatgaaggcttatgtaacatcctataatttaactgcatatcgcttgtacgttagaag |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28784310 |
cacatacaaaccactacccattacaaaggacaaaacatgaaggcttatgtaacatcctataatttaactgcatatcgcttgtacgttagaag |
28784401 |
T |
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