View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3133_high_8 (Length: 387)
Name: NF3133_high_8
Description: NF3133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3133_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 39526594 - 39526965
Alignment:
| Q |
1 |
gaacctatacatttaccttctaaatatggttttgaaataacaacttcaaggtatggcaattttggtaaaccagtacgaattttcagtattacttaatcta |
100 |
Q |
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| T |
39526594 |
gaacctataaatttaccttctaaatatggttttgaaataacaacttcaaggtatggcaattttggtaaaccagtacgaattttcagtattacttaatcta |
39526693 |
T |
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| Q |
101 |
tttattagcaaaacaatcataatcaaacacttttaacgaaattattatttaaccaattcagtttttaggcaataaaaggagagactctgtcctaccttta |
200 |
Q |
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| T |
39526694 |
tttattagcaaaacaatcataatcaaacacttttaacgaaattattatttaaccaattcagtttttaggcaataaaaggagagacactgtcctacattta |
39526793 |
T |
|
| Q |
201 |
taatattcaaacagaacataaaccaacaaatattttcttgccaannnnnnngaaaaccaaacaagaattatagcaaacatagtatggaaacatctaataa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39526794 |
taatattcaaacagaacataaaccaacaaatattttcttgccaatttttttgaaaaccaaacaagaattatagcaaacatagtatggaaacatcgaataa |
39526893 |
T |
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| Q |
301 |
aaaccaggtgtctaatgtacaaataaaagtatttgnnnnnnnnttatgtcaagtcagcaaaccagttgatat |
372 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39526894 |
aaaccaggtgtctaatgtacaaataaaagtatttgaaaaaaaattatgtcaagtcagcaaaccagttgatat |
39526965 |
T |
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