View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3133_low_1 (Length: 787)
Name: NF3133_low_1
Description: NF3133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3133_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 20 - 457
Target Start/End: Complemental strand, 7904903 - 7904466
Alignment:
| Q |
20 |
ctcagcatagaaagtgaagtgtatgagttactttttcatttaggattcatctctagagtgaaatttgtgtatatttctagtcattaggaaatgaccctag |
119 |
Q |
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| T |
7904903 |
ctcagcatagaaagtgaagtgtatgagttactttctcatttaggattcatctctagagtgaaatttgtgtatatttctagtcattaggaaatgaccctag |
7904804 |
T |
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| Q |
120 |
gatcttggtttagttagcttagctgtatttcatactttgttctccattagcatcatcaaataaatgtacctattgaaaatttggataaaaatggtgannn |
219 |
Q |
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| T |
7904803 |
gatcttggtttacttagcttagctgtatttcatactttgttctccattagcatcatcaaataaatgtacctattgaaaatttggataaaaatggtgattt |
7904704 |
T |
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| Q |
220 |
nnnn-aagcaattcagttttgttatgtatttgttattgcaagagagctgctctcatgcgcgaggcgcatgggttatgtgtttctaggggtttttgcttct |
318 |
Q |
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| T |
7904703 |
tttttaagcaattcagttttgttatgtatttgttattgcaagagagctgctctcatgcgcgaggcgcatgggttatgtgtttctaggggtttttgcttct |
7904604 |
T |
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| Q |
319 |
gccatgtacgcgaggcacaccccgtgcgaggaccatgacttgtataatgacctactcgctcaaaagaaaggtagttgttattctcattgtctcatactca |
418 |
Q |
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| T |
7904603 |
gccatgtacgcgaggcacaccccgtgcgaggaccatgacttgtataatgacctactcgctcaaaagaaaggtagttgttattctcattgtctcatactcg |
7904504 |
T |
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| Q |
419 |
cttcaatctcccactaacttaagcggtatgagtggttgc |
457 |
Q |
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| T |
7904503 |
cttcaatctcccactaacttaagc-gtatgagtggttgc |
7904466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 456 - 776
Target Start/End: Complemental strand, 7904436 - 7904116
Alignment:
| Q |
456 |
gccgccctccatcgagcctcaataacatcgactgtttctctagatccacctcgaatcaaattttaattttaaaatgattattatttcaaaataaaacata |
555 |
Q |
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| T |
7904436 |
gccgccctccatcgagcttcaataacatcgactgtttctctagatccacctcgaatcaaattttaattttaaaatgattattatttcaaaataaaacata |
7904337 |
T |
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| Q |
556 |
tatattatgttcaatggagaaattctttacttcataaattcatttattatgtcctctcnnnnnnnnnnnnnnnncattaattatgtgaatagggtttcct |
655 |
Q |
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| T |
7904336 |
tatattatgttcaatggagaaattttttacttcataagttcatttattatgtcctctcaaaacaaaataaaaaacattaattatgtgaatagggtttcct |
7904237 |
T |
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| Q |
656 |
aatttccaactagtcaaaaaaggtgtattttgtcttgttcaaaaaagtttattttgtcgtgtagattgaaaagtcgtgcttttttcttctctgtagtact |
755 |
Q |
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| T |
7904236 |
aatttccaactagtcaaaaaaggggtattttgtcttgttcaaaaaagtttattttgtcgtgtagattgaaaagtcgtgcttttttcttctctgtagtact |
7904137 |
T |
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| Q |
756 |
agtattctaaaacatgatgat |
776 |
Q |
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| T |
7904136 |
agtattctaaaacatgatgat |
7904116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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