View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3133_low_12 (Length: 239)

Name: NF3133_low_12
Description: NF3133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3133_low_12
NF3133_low_12
[»] scaffold0312 (1 HSPs)
scaffold0312 (1-224)||(10667-10890)
[»] chr1 (10 HSPs)
chr1 (1-224)||(419681-419904)
chr1 (1-224)||(975257-975480)
chr1 (1-224)||(960332-960558)
chr1 (1-224)||(936451-936677)
chr1 (1-224)||(942371-942597)
chr1 (63-222)||(924236-924395)
chr1 (1-224)||(949360-949586)
chr1 (1-224)||(971641-971867)
chr1 (63-222)||(916185-916344)
chr1 (1-224)||(909701-909921)


Alignment Details
Target: scaffold0312 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 10890 - 10667
Alignment:
Q  1 ttttgtgacagtaaaacactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccagatgctattgtata 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10890 ttttgtgacagtaaaacactgcataagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccagatgctattgtata 10791  T
Q  101 ttgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10790 ttgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgtt 10691  T
Q  201 acacaaaccttttcctctcctttg 224  Q
    ||||||||||||||||||||||||    
T  10690 acacaaaccttttcctctcctttg 10667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 419681 - 419904
Alignment:
Q  1 ttttgtgacagtaaaacactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccagatgctattgtata 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  419681 ttttgtgacagtaaaacactgcataagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccagatgctattgtata 419780  T
Q  101 ttgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  419781 ttgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgtt 419880  T
Q  201 acacaaaccttttcctctcctttg 224  Q
    ||||||||||||||||||||||||    
T  419881 acacaaaccttttcctctcctttg 419904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 975480 - 975257
Alignment:
Q  1 ttttgtgacagtaaaacactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccagatgctattgtata 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  975480 ttttgtgacagtaaaacactgcataagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccagatgctattgtata 975381  T
Q  101 ttgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  975380 ttgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtcgtgaaatcaaccatagactccaatgatgtt 975281  T
Q  201 acacaaaccttttcctctcctttg 224  Q
    ||||||||||||||||||||||||    
T  975280 acacaaaccttttcctctcctttg 975257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 960558 - 960332
Alignment:
Q  1 ttttgtgacagtaaaacactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccagatgctattgtata 100  Q
    |||| ||||||||||| ||||| |||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||   |||||||  |||    
T  960558 ttttatgacagtaaaaaactgcataagggtaattctctttgtgacacacaatagttttgttcttctcacccaatttcttcactccttttgctattacata 960459  T
Q  101 ttgttgtaa---attactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgat 197  Q
    |||||| ||   |||||| | ||| | |||||||||||||||||| |||||||| || || ||||| ||| ||||||||||||||||||| ||||||||     
T  960458 ttgttgcaaaccattactatttttatccacttctgttgaaacagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaa 960359  T
Q  198 gttacacaaaccttttcctctcctttg 224  Q
    |||||||||| ||||||||| ||||||    
T  960358 gttacacaaagcttttcctcacctttg 960332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 936677 - 936451
Alignment:
Q  1 ttttgtgacagtaaaacactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccagatgctattgtata 100  Q
    |||| ||||||||||| ||||| ||||||||| |||||||||||||||| |||||||| ||||| || ||||| |||||||| ||   ||| |||  |||    
T  936677 ttttatgacagtaaaaaactgcataagggtaactctctttgtgacacactacagctttattcttttctcccaatttcttcacaccttttgccattacata 936578  T
Q  101 ttgttgtaaattact---ttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgat 197  Q
    || ||| || | |||   |||||| |||||||||||||||||||| || ||||| || |||||||| ||||||||||||||||||||||| |||||||||    
T  936577 ttcttgcaagtcactgctttcttttttcacttctgttgaaacagcttcgacattgtttccaagtttcgaagtagtgaaatcaaccatagattccaatgat 936478  T
Q  198 gttacacaaaccttttcctctcctttg 224  Q
    |||||||||| ||||||||||||||||    
T  936477 gttacacaaagcttttcctctcctttg 936451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 942597 - 942371
Alignment:
Q  1 ttttgtgacagtaaaacactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccagatgctattgtata 100  Q
    |||| ||||||||||| ||||| |||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||   |||||||  |||    
T  942597 ttttatgacagtaaaaaactgcataagggtaattctctttgtgacacacaatagttttgttcttctcacccaatttcttcactccttttgctattacata 942498  T
Q  101 ttgttgtaa---attactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgat 197  Q
    |||||| ||   |||||| | ||| | |||||||||||||||||| |||||||| || || ||||| ||| | ||||||||||||||||| ||||||||     
T  942497 ttgttgcaaaccattactatttttatccacttctgttgaaacagcttcaacattgtttccgagtttcgaaatggtgaaatcaaccatagattccaatgaa 942398  T
Q  198 gttacacaaaccttttcctctcctttg 224  Q
    |||| ||||| ||||||||| ||||||    
T  942397 gttatacaaagcttttcctcacctttg 942371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 63 - 222
Target Start/End: Complemental strand, 924395 - 924236
Alignment:
Q  63 ttctcacccaacttcttcactccagatgctattgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtt 162  Q
    ||||||||||||||||| |||||   ||||||| |||||||||||| || |||||||||||||||||||||||||||||| |||||||| || ||||| |    
T  924395 ttctcacccaacttcttaactccttttgctattatatattgttgtatatcactttctttgttcacttctgttgaaacagcttcaacattgtttccaagct 924296  T
Q  163 tagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctt 222  Q
    |||||||||||||||||||||| ||||| |||||||||||||||  ||||||||||||||    
T  924295 tagaagtagtgaaatcaaccattgactctaatgatgttacacaactcttttcctctcctt 924236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 949586 - 949360
Alignment:
Q  1 ttttgtgacagtaaaacactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccagatgctattgtata 100  Q
    |||| ||||||||||| |||| ||||||||||||||||||||||||||||| || |||||||||||||||||| || ||||||||   ||||||   |||    
T  949586 ttttatgacagtaaaaaactgtgtaagggtaattctctttgtgacacacaatagttttgttcttctcacccaatttattcactccttttgctataacata 949487  T
Q  101 ttgttgtaa---attactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgat 197  Q
    |||||| ||   |||||| | ||| | ||||||||| |||| ||| |||||||| || || ||||| ||| ||||||||||||||||||| ||||||||     
T  949486 ttgttgcaaaccattactatttttatccacttctgtggaaatagcttcaacattgtttccgagttttgaaatagtgaaatcaaccatagattccaatgaa 949387  T
Q  198 gttacacaaaccttttcctctcctttg 224  Q
    |||||||||| ||||||||| ||||||    
T  949386 gttacacaaagcttttcctcacctttg 949360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 971867 - 971641
Alignment:
Q  1 ttttgtgacagtaaaacactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccagatgctattgtata 100  Q
    |||| ||||||||||| ||||| |||||||||||||||||||||||||||| || |||||||||||||||||| || ||||||||   ||||||   |||    
T  971867 ttttatgacagtaaaaaactgcataagggtaattctctttgtgacacacaatagttttgttcttctcacccaatttattcactccttttgctataacata 971768  T
Q  101 ttgttgtaa---attactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgat 197  Q
    |||||| ||   |||||| | ||| | |||||||||||||||||| |||||||| || || ||||| ||| | ||||||||||||||||| ||||||||     
T  971767 ttgttgcaaaccattactatttttatccacttctgttgaaacagcttcaacattgtttccgagtttcgaaatggtgaaatcaaccatagattccaatgaa 971668  T
Q  198 gttacacaaaccttttcctctcctttg 224  Q
    |||| ||||| ||||||||| ||||||    
T  971667 gttatacaaagcttttcctcacctttg 971641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 63 - 222
Target Start/End: Complemental strand, 916344 - 916185
Alignment:
Q  63 ttctcacccaacttcttcactccagatgctattgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtt 162  Q
    ||||||| ||||||||| |||||   ||||||| |||||||||||  || ||||||||||||| |||||||||||||||| |||||||| || ||||| |    
T  916344 ttctcactcaacttcttaactccttttgctattatatattgttgtttatcactttctttgttcgcttctgttgaaacagcttcaacattgtttccaagct 916245  T
Q  163 tagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctt 222  Q
    |||||||||||||||||||||| || || |||||||||||||||  ||||||||||||||    
T  916244 tagaagtagtgaaatcaaccattgattctaatgatgttacacaactcttttcctctcctt 916185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 909921 - 909701
Alignment:
Q  1 ttttgtgacagtaaaacactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccagatgctattgtata 100  Q
    |||||||||||||||| ||||| ||||||||||||  |||||| ||||||||    |||||||   | ||||  |||||||||||   |||||||  |||    
T  909921 ttttgtgacagtaaaaaactgcataagggtaattccgtttgtggcacacaaccaaattgttct---ctcccattttcttcactccgtttgctattacata 909825  T
Q  101 ttgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgtt 200  Q
    ||||||||||  |||||||   || ||||||||||||||||  |||||||| || ||||| ||  ||||||||||||||| |||||| |||||||||||     
T  909824 ttgttgtaaaccactttctccatttacttctgttgaaacagtgtcaacattgtttccaagcttcaaagtagtgaaatcaatcatagattccaatgatgtc 909725  T
Q  201 acacaaaccttttcctctcctttg 224  Q
    ||||||| ||||||||||||||||    
T  909724 acacaaagcttttcctctcctttg 909701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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