View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3133_low_2 (Length: 478)

Name: NF3133_low_2
Description: NF3133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3133_low_2
NF3133_low_2
[»] chr2 (9 HSPs)
chr2 (235-468)||(17174106-17174351)
chr2 (235-468)||(17169301-17169543)
chr2 (235-461)||(17184226-17184451)
chr2 (235-350)||(17179373-17179488)
chr2 (342-468)||(17178928-17179054)
chr2 (19-124)||(17179611-17179707)
chr2 (29-124)||(17169674-17169769)
chr2 (29-124)||(17174482-17174577)
chr2 (19-124)||(17184601-17184715)


Alignment Details
Target: chr2 (Bit Score: 136; Significance: 9e-71; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 235 - 468
Target Start/End: Complemental strand, 17174351 - 17174106
Alignment:
Q  235 aaccatttatcccaaattttgttttggattcttttgttgcaccaaccgtaagtcaacaaacaatttttat------------caaatatagtaaaaggag 322  Q
    |||||||||||| || |||||||||||||||||||| ||||||||| | ||||||| |||||||||||||            ||||||||||||||| ||    
T  17174351 aaccatttatccaaatttttgttttggattcttttgctgcaccaactgcaagtcaagaaacaatttttatttttatttttatcaaatatagtaaaagaag 17174252  T
Q  323 aatgtaattgcacttataatttatttatatacattgatttccatctctggatggtttaattccaacaacatagataatgatttctgcacacnnnnnnnta 422  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |       ||    
T  17174251 aatgtaatgacacttataatttatttatatacattgatttccatctctggatgatttaattccaacaacatagataatgatttctgcactcaaaaaaata 17174152  T
Q  423 tcaagataaaatgatgtgttttcatcattgatcaactaagagtata 468  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  17174151 tcaagataaaatgatgtgttttcatcattgttcaactaagagtata 17174106  T

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Target: chr2; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 235 - 468
Target Start/End: Complemental strand, 17169543 - 17169301
Alignment:
Q  235 aaccatttatcccaaattttgttttggattcttttgttgcaccaaccgtaagtcaacaaacaattttt--------atcaaatatagtaaaaggagaatg 326  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||| | ||||||| |||||||||||        ||||||||||||||||  ||||||    
T  17169543 aaccatttatcccaatttttgttttggattcttttgctgcaccaactgcaagtcaagaaacaatttttttttttttatcaaatatagtaaaataagaatg 17169444  T
Q  327 taattgcacttataatttatttatatacattgatttccatctctggatggtttaattccaacaacatagataatgatttctgcacac-nnnnnnntatca 425  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||        |||||    
T  17169443 taatcgcacttatactttatttatatacattgatttccatctctggatgatttaattccaacaacatagataatgatttctgcacacaaaaaaaatatca 17169344  T
Q  426 agataaaatgatgtgttttcatcattgatcaactaagagtata 468  Q
    ||| ||||||||||||||||||||||| ||||| |||||||||    
T  17169343 agacaaaatgatgtgttttcatcattgttcaacaaagagtata 17169301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 235 - 461
Target Start/End: Complemental strand, 17184451 - 17184226
Alignment:
Q  235 aaccatttatcccaaattttgttttggattcttttgttgcaccaaccgtaagtcaacaaacaattttt-atcaaatatagtaaaaggagaatgtaattgc 333  Q
    ||||||||||||||| |||| |||| |||||||||||||||||||| | ||||||||||||||||||| |||||||||| |||||| ||||||||||||     
T  17184451 aaccatttatcccaatttttattttagattcttttgttgcaccaactgcaagtcaacaaacaattttttatcaaatataataaaagaagaatgtaattga 17184352  T
Q  334 acttataatttatttatatacattgatttccatctctggatggtttaattccaacaacatagataatgatttctgcacac-nnnnnnntatcaagataaa 432  Q
    || ||||||||||||||||||||||||| ||||   |||||| ||||||| | |||||| ||||| | |||||| |||||        ||||||||||||    
T  17184351 acatataatttatttatatacattgattcccat---tggatgttttaattgccacaacaaagatagtaatttctacacacaaaaagaatatcaagataaa 17184255  T
Q  433 atgatgtgttttcatcattgatcaactaa 461  Q
    |||||| ||||||||||||||| ||||||    
T  17184254 atgatgcgttttcatcattgataaactaa 17184226  T

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Target: chr2; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 235 - 350
Target Start/End: Complemental strand, 17179488 - 17179373
Alignment:
Q  235 aaccatttatcccaaattttgttttggattcttttgttgcaccaaccgtaagtcaacaaacaatttttatcaaatatagtaaaaggagaatgtaattgca 334  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17179488 aaccatttatcccaatttttattttggattcttttgttgcaccaactgcaagtcaacaaacaatttttatcaaatatagtaaaagaagaatgtaattgca 17179389  T
Q  335 cttataatttatttat 350  Q
    ||||||||||||||||    
T  17179388 cttataatttatttat 17179373  T

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Target: chr2; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 342 - 468
Target Start/End: Complemental strand, 17179054 - 17178928
Alignment:
Q  342 tttatttatatacattgatttccatctctggatggtttaattccaacaacatagataatgatttctgcacacnnnnnnntatcaagataaaatgatgtgt 441  Q
    |||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  17179054 tttatttatatacattgatttccatctccggatggtataattcaaacaacatagataatgatttctgcacaccaaaaaatatcaagataaaatgatgtgt 17178955  T
Q  442 tttcatcattgatcaactaagagtata 468  Q
    |||||||||||||||||||||||||||    
T  17178954 tttcatcattgatcaactaagagtata 17178928  T

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Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 17179707 - 17179611
Alignment:
Q  19 acctacgccaaccatttttgtgggaaaagaaacctccccaacctccttaagttctccaattttcactattgaatccacttccattcactttcccacttcc 118  Q
    |||||| |||||||||||||||||||||||||||||| |||         |||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  17179707 acctacaccaaccatttttgtgggaaaagaaacctcctcaa---------gttctccaattttcactattgaatccacttccattcactttctcactttc 17179617  T

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Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 17169769 - 17169674
Alignment:
Q  29 accatttttgtgggaaaagaaacctccccaacctccttaagttctccaattttcactattgaatccacttccattcactttcccacttccattttc 124  Q
    |||||||||||||||||||||||||||||| | |||  ||||  ||| ||||||||||||| ||||||||||||| || |||||||||||||||||    
T  17169769 accatttttgtgggaaaagaaacctccccagcatccccaagtaatcctattttcactattggatccacttccatttacattcccacttccattttc 17169674  T

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Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 17174577 - 17174482
Alignment:
Q  29 accatttttgtgggaaaagaaacctccccaacctccttaagttctccaattttcactattgaatccacttccattcactttcccacttccattttc 124  Q
    |||||||||||||||||||||||||||||| | |||  ||||    ||||||||||||||||||||||||||||| || ||| |||||||||||||    
T  17174577 accatttttgtgggaaaagaaacctccccagcatccccaagtaaatcaattttcactattgaatccacttccatttacattcgcacttccattttc 17174482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 17184715 - 17184601
Alignment:
Q  19 acctacgccaaccatttttgtgggaaaagaaacctccccaacctcctta---------agttctccaattttcactattgaatccacttccattcacttt 109  Q
    ||||||||| ||||||||||||||||| |||||||||||| |||||  |         |||||||||||||||| |||||||||||||||| ||| || |    
T  17184715 acctacgcccaccatttttgtgggaaatgaaacctccccatcctccccagcgtccccaagttctccaattttcagtattgaatccacttccgttctctct 17184616  T
Q  110 cccacttccattttc 124  Q
     ||||||||||||||    
T  17184615 tccacttccattttc 17184601  T

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