View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3133_low_4 (Length: 465)
Name: NF3133_low_4
Description: NF3133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3133_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 85 - 449
Target Start/End: Complemental strand, 24566643 - 24566279
Alignment:
| Q |
85 |
cataacaagttaccttctttatcttatggaagtatccatcacgtgaacatatttgatttgacaattgacgggtaacagatatggacaagatacgatttat |
184 |
Q |
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| T |
24566643 |
cataacaagttaccttctttatcttatggaagtatccatcacgtgaacatatttgatttgacaattgacgggtaacagatatggacaagatacgatttat |
24566544 |
T |
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| Q |
185 |
gaaattacgatcacttgaattgatgaaactgaattttatcaagttgtttttctgtgtgtttataatcaatataattgacatgttcaattaacccactcga |
284 |
Q |
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| T |
24566543 |
gaaattatgatcacttgaattgatgaaactgaattttatcaagttgttttcctgtgtgtttataatcaatataattgacatgttcaattaacccactcga |
24566444 |
T |
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| Q |
285 |
gcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttgcaaaaattatttttagtttgagaatgagaaagataaacaattgtac |
384 |
Q |
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| T |
24566443 |
gcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttgcaaaaattatttttagtttgagaatgagaaagataaacaattgtac |
24566344 |
T |
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| Q |
385 |
taaaaaagtttctttatgattaaatgtttctttcatgcaatagtctttcttatcaagcatgtatc |
449 |
Q |
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| T |
24566343 |
taaaaaagtttctttatgattaaatgtttctttcatgcaatagtctttcttatcaagcatgtatc |
24566279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 243 - 427
Target Start/End: Original strand, 44335247 - 44335431
Alignment:
| Q |
243 |
tttataatcaatataattgacatgttcaattaacccactcgagcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttgcaaa |
342 |
Q |
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| T |
44335247 |
tttaaaatcaatataaataatatattcaattaaatcactccagcacctacattttatgatgtcttatgcatgatatgtgaatcagatgaatatttgcaaa |
44335346 |
T |
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| Q |
343 |
aattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgattaaatgtttctttcatgcaatag |
427 |
Q |
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|| || || ||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| |
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| T |
44335347 |
aactacttacagtttgagaataagaaagataaacaattgtactaaaaaagcttctttgtgattaaatgcttctttcatgcaatag |
44335431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 243 - 427
Target Start/End: Complemental strand, 44339720 - 44339536
Alignment:
| Q |
243 |
tttataatcaatataattgacatgttcaattaacccactcgagcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttgcaaa |
342 |
Q |
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| T |
44339720 |
tttaaaatcaatataaataatatattcaattaaatcactccagcaccaacattttatgctgtcttctacatgatatgtgaatcagatggatatttgcaaa |
44339621 |
T |
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| Q |
343 |
aattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgattaaatgtttctttcatgcaatag |
427 |
Q |
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| T |
44339620 |
aactacttacagtttgagaataagaaagataaacaattgtactaaaaaagcttctttgtgattaaatgcttctttcatgcaatag |
44339536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 305 - 449
Target Start/End: Original strand, 45532545 - 45532691
Alignment:
| Q |
305 |
cttctgcataatatgtggattggatgggtatttgcaaaaattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgat |
404 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||| || |||||||||||||||| |||||||||| ||||||||||||||| | |||| |
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| T |
45532545 |
cttctgcataatatgtggattggatatgtattttaaaaaattatttataatttgagaatgagaaaggtaaacaattgaactaaaaaagtttctctgtgat |
45532644 |
T |
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| Q |
405 |
taaatgtttctttcatgca--atagtctttcttatcaagcatgtatc |
449 |
Q |
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| T |
45532645 |
gaaatgcttctttcatgtattagagactttcatatcaagcatgtatc |
45532691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 45532459 - 45532540
Alignment:
| Q |
194 |
atcacttgaattgatgaaactgaattttatcaagttgtttttctgtgtg-tttataatcaatataattgacatgttcaatta |
274 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||| ||||||| |||| ||||||| ||||||||||||||||||| |
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| T |
45532459 |
atcacttgaatttatgaaactgaattttatcaagtttttttcctgtgtgttttaaaatcaatctaattgacatgttcaatta |
45532540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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