View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3133_low_6 (Length: 410)
Name: NF3133_low_6
Description: NF3133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3133_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 21793126 - 21792744
Alignment:
| Q |
18 |
atgtcttcttctccaaaattgaaatcctcagaaacttccaatcatgttccttctttattggcaaatttcttattacggtgctgcaagcaaaaacaaaaat |
117 |
Q |
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| T |
21793126 |
atgtcttcttctccaaaattgaaatcctcagaaacttccaatcatgttccttctttattggcaaatttcttattacggtgctgcaagcaaaaacaaaatt |
21793027 |
T |
|
| Q |
118 |
gtctacccatgaaacatacatgcggtatatgttttgatttgaaaacagattctgatatgttccaaacaacaaagtgcaaccacttctattgccttgactg |
217 |
Q |
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| T |
21793026 |
gtctacccatgaaacatacatgcggtatatgttttgatttgaaaacaaattctgatatgttccaaacaacaaagtgcaaccacttctattgccttgactg |
21792927 |
T |
|
| Q |
218 |
catacgcaaatatgtaaccattcaaataagcaattatttggttaaggttaaggttattacttgtccatgtccaaattgttttgtggaattgaagccaaaa |
317 |
Q |
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| T |
21792926 |
catacgcaaatatgtaacctttcaaataagcaattatttggttaaggttaaggttattacttgtccaagtccaaattgttttgttgaattgaagccaaaa |
21792827 |
T |
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| Q |
318 |
caattgcaacatattttacctaaacaagttacttttcgatggaggtctttaatttgtgagtcttctatctccttgaagttcat |
400 |
Q |
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| T |
21792826 |
caattgcaacatattttacctaaacaagttacttttcgatggaggtctttaatttgtgagtcttctatctccttgaagttcat |
21792744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 21788448 - 21788081
Alignment:
| Q |
18 |
atgtcttcttctccaaaattgaaatcctcagaaacttccaatcatgttccttctttattggcaaatttcttattacggtgctgcaagcaaaaacaaaaat |
117 |
Q |
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| T |
21788448 |
atgtcttcttctccaaaatcgaaatcctcagaaacttccaatcatgctccttctttattggcaaatttcttattacggtgctgcaagcaaaaacaaaact |
21788349 |
T |
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| Q |
118 |
gtctacccatgaaacatacatgcggtatatgttttgatttgaaaacagattctgatatgttccaaacaacaaagtgcaaccacttctattgccttgactg |
217 |
Q |
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| T |
21788348 |
gtctacccatgaaacatacatgcgatatatgttttgatttgaagacaaattctgatatgttccaaacaacaaagtgcaaccacttctattgccttgactg |
21788249 |
T |
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| Q |
218 |
catacgcaaatatgtaaccattcaaataagcaattatttggttaaggttaaggttattacttgtccatgtccaaattgttttgtggaattgaagccaaaa |
317 |
Q |
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|||| |||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||| |
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| T |
21788248 |
catatgcaaatatgtaacctttcaaataaacaataatttggttaaggttaaggttattacttgtccaagtccaaattgttctgtgaaattgaagccaaaa |
21788149 |
T |
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| Q |
318 |
caattgcaacatattttacctaaacaagttacttttcgatggaggtctttaatttgtgagtcttctat |
385 |
Q |
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| T |
21788148 |
caattgcaacacattttacctaaacaagttacttttcgatgggagtctttaattcataagtcttctat |
21788081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 144 - 385
Target Start/End: Complemental strand, 21795019 - 21794784
Alignment:
| Q |
144 |
atatgttttgatttgaaaacagattctgatatgttccaaacaacaaagtgcaaccacttctattgccttgactgcatacgcaaatatgtaaccattcaaa |
243 |
Q |
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||||||||||| ||||||||| ||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||| |||||||||||||| |||||| |
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| T |
21795019 |
atatgttttgaattgaaaacatattctgatatgttccaaacgacaaagtgcaaacacctctattgccttgactgcatatgcaaatatgtaacctttcaaa |
21794920 |
T |
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| Q |
244 |
taagcaattatttggttaaggttaaggttattacttgtccatgtccaaattgttttgtggaattgaagccaaaacaattgcaacatattttacctaaaca |
343 |
Q |
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||| |||| ||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||| | |||||||||||| |
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| T |
21794919 |
taaacaataatttggttaag------gttattacttgtccaagtccaaattgttttgtgcaattgaagccaaatgaattgcaacacaatttacctaaaca |
21794826 |
T |
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| Q |
344 |
agttacttttcgatggaggtctttaatttgtgagtcttctat |
385 |
Q |
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| T |
21794825 |
agttacttttcgatgggagtctttaatttatgagtcttctat |
21794784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 179
Target Start/End: Complemental strand, 24976916 - 24976878
Alignment:
| Q |
141 |
ggtatatgttttgatttgaaaacagattctgatatgttc |
179 |
Q |
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| T |
24976916 |
ggtatatgctttgatttgaaaacagattcagatatgttc |
24976878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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