View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3133_low_7 (Length: 407)
Name: NF3133_low_7
Description: NF3133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3133_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 24 - 180
Target Start/End: Complemental strand, 17574029 - 17573873
Alignment:
| Q |
24 |
ccttcacttttattcaacttagtcaattatttatttttcatgtgtaattttacgtatgtctcttatattttcagccttttggagaggttcctcttgttca |
123 |
Q |
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| T |
17574029 |
ccttcaattttattcaacttagtcaattatttatttttcatgtgtaattttacctttatctcttatattttcagccttttggagaggttcctcttgttca |
17573930 |
T |
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| Q |
124 |
agatggtgattataccctctatggttagccacctcatccctttactattttctgcaa |
180 |
Q |
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| T |
17573929 |
agatggtgattataccctctatggttagccacctcatccctttactattttctgcaa |
17573873 |
T |
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Target: chr3; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 200 - 387
Target Start/End: Complemental strand, 17573812 - 17573621
Alignment:
| Q |
200 |
ttaatcccttataatttaaactttggatcggggtgttacatttaatt--gaggttaaaactgtttatattttcactgcatgcatcttt-gcctcccttat |
296 |
Q |
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| T |
17573812 |
ttaatcccttatattttaaactttggatcagggtgttacatttaattttgagcttaaaactgtttatattttcactgcatgcatcttttgcctcccttgt |
17573713 |
T |
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| Q |
297 |
catgattcatgtgtttttag-agggtaatcaagtggttaatcatcttcacttaaggtcaaattgttctagagaaatcaagtttgaatcctag |
387 |
Q |
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| T |
17573712 |
cctgattcatgtgttttttttagggtaatcgagtcgttaatcaacttcacttaaggtcaaattgttctagagaaatcaagtttgaatcctag |
17573621 |
T |
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