View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3134_high_11 (Length: 240)
Name: NF3134_high_11
Description: NF3134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3134_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 101; Significance: 3e-50; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 1212492 - 1212621
Alignment:
| Q |
29 |
tatatcatgccaaacatgcttagcaaaaacatctaaatgcttgtggtaccaaacaaagatagaaagtggtactaaacaaagatagaaagtggtaccnnnn |
128 |
Q |
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| T |
1212492 |
tatatcatgccaaacatgcttagcaaaaatatctaaatgcttgtggtaccaaacaaagatagaaagtggtactaaacaaagatagaaagtggtaccaaaa |
1212591 |
T |
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| Q |
129 |
nnncatatatacctctcatgtggctagtag |
158 |
Q |
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|||| |||||||||||||||||||||| |
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| T |
1212592 |
aaacataaatacctctcatgtggctagtag |
1212621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 1234082 - 1234141
Alignment:
| Q |
40 |
aaacatgcttagcaaaaacatctaaatgcttgtggtaccaaacaaagatagaaagtggtac |
100 |
Q |
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| T |
1234082 |
aaacatgcttagcaaaa-catataaatacttgtggtaccaaacaaagatagaaagtggtac |
1234141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 1212609 - 1212674
Alignment:
| Q |
165 |
atgtggctagtaggctcccacaacgtatatga-------ttattttgaaggaaacgtatatgatat |
223 |
Q |
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| T |
1212609 |
atgtggctagtaggctcccacaacgtatatgatatttttttattttgaaggaaacgtatatgatat |
1212674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 1234232 - 1234282
Alignment:
| Q |
132 |
catatatacctctcatgtggctagtagtgtattatgtggctagtaggctcc |
182 |
Q |
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| T |
1234232 |
catatatacctctcctgtggccagtagtgtattacgtggctagtaagctcc |
1234282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 11202367 - 11202470
Alignment:
| Q |
94 |
gtggtactaaacaaagatagaaagtggtaccnnnnnnncatatatacctctcatgtggctagtagtgtattatgtggctagtaggctcccacaacgtata |
193 |
Q |
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| T |
11202367 |
gtggtactaaacaaagatagaaagtggtaccaaaaaaacatatatacctctcatgtggctagtagtgtattatgtggctagtaggctcccacaacgtata |
11202466 |
T |
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| Q |
194 |
tgat |
197 |
Q |
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|||| |
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| T |
11202467 |
tgat |
11202470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 11202275 - 11202346
Alignment:
| Q |
29 |
tatatcatgccaaacatgcttagcaaaaacatctaaatgcttgtggtaccaaacaaagatagaaagtggtac |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11202275 |
tatatcatgccaaacatgcttagcaaaaacatttaaatgcttgtggtaccaaacaaagatagaaagtggtac |
11202346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 11202349 - 11202396
Alignment:
| Q |
53 |
aaaaacatctaaatgcttgtggtaccaaacaaagatagaaagtggtac |
100 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
11202349 |
aaaaacatataaatgcttgtggtactaaacaaagatagaaagtggtac |
11202396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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