View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3134_high_14 (Length: 235)
Name: NF3134_high_14
Description: NF3134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3134_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 48351951 - 48352159
Alignment:
| Q |
15 |
cacagacggaatagccttgagaagggtct---aaccatttccacctatcatgaatatgagcctgcaaaacaatgttaagtaataaaa--aagtgcattcc |
109 |
Q |
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| T |
48351951 |
cacagacggaatagccttgagaagggtctggcaaccatttccacctatcatgaatatgagcctgcaaaacaatgttaagtaataaaaaaaagtgcattcc |
48352050 |
T |
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| Q |
110 |
ctcattttctcctcctccatgctaataggctccgtctccacacccacgcgccacccccttcctcccatcccaaacacgccatctcccccacgccatctga |
209 |
Q |
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| T |
48352051 |
ctcattttctcctcctccatgctaataggctccgtctccacacccacgcgccacccccttcctcccatcccaaacacgccatctcccccacgccatctga |
48352150 |
T |
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| Q |
210 |
gataatatt |
218 |
Q |
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||||||||| |
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| T |
48352151 |
gataatatt |
48352159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 18591257 - 18591312
Alignment:
| Q |
44 |
aaccatttccacctatcatgaatatgag-cctgcaaaacaatgttaagtaataaaa |
98 |
Q |
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| T |
18591257 |
aaccatttccacctatcatgaacatgagccccgcaaaacaatgttatgtaacaaaa |
18591312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 46 - 200
Target Start/End: Complemental strand, 34631150 - 34630995
Alignment:
| Q |
46 |
ccatttccacctatcatgaatatgagcctgcaaaacaatgttaagtaataaaaaagtgcattccctcattttctcctcctcc-atgctaataggctccgt |
144 |
Q |
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| T |
34631150 |
ccatttccacctatcataaacatgagcctacaaaacaaggttatgtaacaaaacagtccattccctcacttcctcttcctcccatgctaataggcgacgt |
34631051 |
T |
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| Q |
145 |
ctccacacccacgcgccacccccttcctcccatcccaaacacgccatctcccccac |
200 |
Q |
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| T |
34631050 |
ctccacaaccacgctccacccccctcctcccatcccaaacttgccatctcctccac |
34630995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 34014555 - 34014523
Alignment:
| Q |
51 |
tccacctatcatgaatatgagcctgcaaaacaa |
83 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
34014555 |
tccacctgtcatgaatatgagcctgcaaaacaa |
34014523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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