View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3134_high_16 (Length: 210)
Name: NF3134_high_16
Description: NF3134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3134_high_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 50200860 - 50201039
Alignment:
| Q |
18 |
agagggcagaagaaccctacctgttaccaagaacagcatgcaatttgacaatgatttcttcctcctgaggagttatgttacctctcttcacatctgatct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50200860 |
agagggcagaagaaccctacctgttaccaagaacagcatgcaatttgacaatgatttcttcctcctgaggagttatgttacctctcttcacatctgatct |
50200959 |
T |
|
| Q |
118 |
taagtagtttatccatctgagtctgcaactctttccacatctcaacaaacctaatatttcattttgttt-tatatatata |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
50200960 |
taagtagtttatccatctgagtctgcaactctttccacatctcaacaaacctaatatttcattttgtttatatatatata |
50201039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 44 - 169
Target Start/End: Complemental strand, 13343099 - 13342974
Alignment:
| Q |
44 |
ccaagaacagcatgcaatttgacaatgatttcttcctcctgaggagttatgttacctctcttcacatctgatcttaagtagtttatccatctgagtctgc |
143 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||| | |||||| |||||||||||||||| ||| || ||||| |||||||| ||||| | |
|
|
| T |
13343099 |
ccaagaacagcatgcaacttgacaatgatttcttcctcatgaggggatatgtttcctctcttcacatctgctctcaaatagttgatccatcttagtctac |
13343000 |
T |
|
| Q |
144 |
aactctttccacatctcaacaaacct |
169 |
Q |
| |
|
||||||| ||||| || ||||||||| |
|
|
| T |
13342999 |
aactcttcccacaccttaacaaacct |
13342974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 159
Target Start/End: Original strand, 48892603 - 48892676
Alignment:
| Q |
86 |
ggagttatgttacctctcttcacatctgatcttaagtagtttatccatctgagtctgcaactctttccacatct |
159 |
Q |
| |
|
||||||||||| |||||||| | ||||| ||||| ||||| |||||||| ||||||||||| ||||||||||| |
|
|
| T |
48892603 |
ggagttatgtttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatct |
48892676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University