View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3134_high_4 (Length: 418)
Name: NF3134_high_4
Description: NF3134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3134_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 11 - 398
Target Start/End: Original strand, 10389139 - 10389526
Alignment:
| Q |
11 |
caaaggccaagttcaagaggctctaaattactactcaattgagtcctcaatagcacttttaatcaccttagtaataaacctatttgtgataaccgttttt |
110 |
Q |
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| T |
10389139 |
caaaggccaagttcaagaggctctaaattactactcaattgagtcctcaatagcactattaatcaccttagtaataaatctatttgtgataaccgttttt |
10389238 |
T |
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| Q |
111 |
gctagagtattctatgatactgaacaagccaaagacataggattagtaaatgcaggacaatatcttgaagaaaaatatggtggagggttctttccaattc |
210 |
Q |
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| T |
10389239 |
gctagagtattctatgatactgaacaagccaaagacataggattagtaaatgcaggacaatatcttgaagaaaaatatggtggagggttctttccaattc |
10389338 |
T |
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| Q |
211 |
tatatatttggggtattggtttattagcagctggtcaaagtagcacaattactggtacctatgctggtcaatttataactgagggatttttaaaattgaa |
310 |
Q |
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| T |
10389339 |
tttatatttggggtattggtttattagcagctggtcaaagtagcacaattactggtacctatgctggtcaatttataactgagggatttttaaaattgaa |
10389438 |
T |
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| Q |
311 |
tatnnnnnnntggttaagggcattgatcactagaagttgtgctattgttccaactatgattgtagcaattgtttttaatacttcagaa |
398 |
Q |
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| T |
10389439 |
tataaaaaaatggttaagggcattgatcactagaagttgtgctattgttccaactatgattgtagcaattgtttttaatacttcagaa |
10389526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 204 - 283
Target Start/End: Complemental strand, 5803524 - 5803445
Alignment:
| Q |
204 |
ccaattctatatatttggggtattggtttattagcagctggtcaaagtagcacaattactggtacctatgctggtcaatt |
283 |
Q |
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| T |
5803524 |
ccaatcctgtatatatggggtattgggttattagcagctggtcaaagtagcactattactggtacatatgctggacaatt |
5803445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 146 - 288
Target Start/End: Original strand, 47292086 - 47292228
Alignment:
| Q |
146 |
cataggattagtaaatgcaggacaatatcttgaagaaaaatatggtggagggttctttccaattctatatatttggggtattggtttattagcagctggt |
245 |
Q |
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| T |
47292086 |
cataggattagtaaatgcagggcaatatcttgaggagaaatatggaggaggactcttccctattctttatatatggggaattgggttactggcggccgga |
47292185 |
T |
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| Q |
246 |
caaagtagcacaattactggtacctatgctggtcaatttataa |
288 |
Q |
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| T |
47292186 |
caaagtagcactatcactggcacatatgctgggcaattcataa |
47292228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 384
Target Start/End: Original strand, 47292261 - 47292324
Alignment:
| Q |
321 |
tggttaagggcattgatcactagaagttgtgctattgttccaactatgattgtagcaattgttt |
384 |
Q |
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| T |
47292261 |
tggttgagagcattgatcactcggagttgtgcaattgtgccaactataattgtagctattgttt |
47292324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 39674016 - 39674089
Alignment:
| Q |
213 |
tatatttggggtattggtttattagcagctggtcaaagtagcacaattactggtacctatgctggtcaatttat |
286 |
Q |
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| T |
39674016 |
tatatatggggtattgggttgttagcagctggtcaaagtagcactataactggtacttatgctggacaatttat |
39674089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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