View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3134_high_6 (Length: 388)

Name: NF3134_high_6
Description: NF3134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3134_high_6
NF3134_high_6
[»] chr4 (6 HSPs)
chr4 (17-208)||(41691809-41692003)
chr4 (282-371)||(41691637-41691726)
chr4 (92-166)||(4059118-4059192)
chr4 (110-147)||(3067633-3067670)
chr4 (113-166)||(52803252-52803305)
chr4 (113-173)||(18371187-18371247)
[»] chr3 (3 HSPs)
chr3 (99-173)||(11076940-11077014)
chr3 (110-173)||(16041166-16041229)
chr3 (116-157)||(37820804-37820845)
[»] chr1 (2 HSPs)
chr1 (99-173)||(25808485-25808559)
chr1 (110-173)||(46298584-46298647)
[»] chr7 (4 HSPs)
chr7 (112-173)||(33902216-33902277)
chr7 (116-184)||(46603776-46603842)
chr7 (116-173)||(9603519-9603576)
chr7 (116-173)||(9831090-9831147)
[»] chr6 (1 HSPs)
chr6 (92-157)||(25070403-25070468)
[»] scaffold0007 (1 HSPs)
scaffold0007 (116-173)||(176221-176278)
[»] chr8 (1 HSPs)
chr8 (113-173)||(25267031-25267091)
[»] chr5 (2 HSPs)
chr5 (113-173)||(7802030-7802089)
chr5 (110-150)||(35075890-35075930)


Alignment Details
Target: chr4 (Bit Score: 128; Significance: 4e-66; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 41692003 - 41691809
Alignment:
Q  17 gaacaaacacatgcttaatcaatgttttttggaaaatgctcttaaacataagtcaacaaaattaaaatagaaaca--ttattataaattgagtaatcaat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  |||||||||||||||||||||||    
T  41692003 gaacaaacacatgcttaatcaatgttttttggaaaatgctcttaaacacaagttaacaaaattaaaatagaaacattttattataaattgagtaatcaat 41691904  T
Q  115 a-ttttagaaatttaaaatcttatcatttgaagacaacatttatattctaattccattttagacttcttaatttaaggcataagttaatatgacc 208  Q
    | ||||| ||||||||||||||||||||| | || |||||||||||| ||||||||||||| |||| |||| |||||||| ||||||| ||||||    
T  41691903 atttttaaaaatttaaaatcttatcatttcatgataacatttatattttaattccattttaaacttgttaacttaaggcacaagttaacatgacc 41691809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 282 - 371
Target Start/End: Complemental strand, 41691726 - 41691637
Alignment:
Q  282 tgatatatagggcttgccattctaaaactcgagcaactcgtgtctatccagacgtgaatattatagagagcgttgttatttcttatgaat 371  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  41691726 tgatatatagagcttgccattataaaactcgagcaactcgtgtctatccagacgtgaatattataaagagcattgttatttcttatgaat 41691637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 166
Target Start/End: Complemental strand, 4059192 - 4059118
Alignment:
Q  92 ttattataaattgagtaatcaatattttagaaatttaaaatcttatcatttgaagacaacatttatattctaatt 166  Q
    |||||| |||||| ||| |  |||||||||||||||||||| ||||| ||| ||||||| |||||| || |||||    
T  4059192 ttattagaaattgtgtattttatattttagaaatttaaaattttatcttttcaagacaaaatttatgttttaatt 4059118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 3067670 - 3067633
Alignment:
Q  110 tcaatattttagaaatttaaaatcttatcatttgaaga 147  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  3067670 tcaatattttagaaatttaaaatcttatcttttcaaga 3067633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 52803305 - 52803252
Alignment:
Q  113 atattttagaaatttaaaatcttatcatttgaagacaacatttatattctaatt 166  Q
    |||||||||||||||||||||||||| ||| |||| || |||||| || |||||    
T  52803305 atattttagaaatttaaaatcttatccttttaagataaaatttatgttttaatt 52803252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 18371187 - 18371247
Alignment:
Q  113 atattttagaaatttaaaatcttatcatttgaagacaacatttatattctaattccatttt 173  Q
    ||||||||||| |||||||||||||  ||| |||| || ||||||||| ||||||| ||||    
T  18371187 atattttagaactttaaaatcttatatttttaagataaaatttatattttaattccttttt 18371247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 11077014 - 11076940
Alignment:
Q  99 aaattgagtaatcaatattttagaaatttaaaatcttatcatttgaagacaacatttatattctaattccatttt 173  Q
    |||||| | ||||||||||||||||||||||||||||||  ||| ||||||| |||||| || ||||||||||||    
T  11077014 aaattgtgcaatcaatattttagaaatttaaaatcttatattttcaagacaaaatttatgttttaattccatttt 11076940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 16041166 - 16041229
Alignment:
Q  110 tcaatattttagaaatttaaaatcttatcatttgaagacaacatttatattctaattccatttt 173  Q
    |||||||| |||||||||||||||||||| ||| ||||||  ||||||  | ||||||||||||    
T  16041166 tcaatattctagaaatttaaaatcttatcttttcaagacataatttatgatttaattccatttt 16041229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 37820845 - 37820804
Alignment:
Q  116 ttttagaaatttaaaatcttatcatttgaagacaacatttat 157  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||    
T  37820845 ttttagaaatttaaaatcttatctttttaagacaatatttat 37820804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 25808559 - 25808485
Alignment:
Q  99 aaattgagtaatcaatattttagaaatttaaaatcttatcatttgaagacaacatttatattctaattccatttt 173  Q
    |||||| ||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||  | ||||||||||||    
T  25808559 aaattgtgtattcaatattttaaaaatttaaaattttatcttttgaagacaacatttatgatttaattccatttt 25808485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 46298584 - 46298647
Alignment:
Q  110 tcaatattttagaaatttaaaatcttatcatttgaagacaacatttatattctaattccatttt 173  Q
    |||||||| |||||||||||||||||||| ||| |||||||||||||| || |||||| |||||    
T  46298584 tcaatattatagaaatttaaaatcttatcttttcaagacaacatttatgttttaattctatttt 46298647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 33902277 - 33902216
Alignment:
Q  112 aatattttagaaatttaaaatcttatcatttgaagacaacatttatattctaattccatttt 173  Q
    ||||||||||||||||||||||||||| ||| ||||||  ||||||| | ||||||||||||    
T  33902277 aatattttagaaatttaaaatcttatcttttcaagacataatttataatttaattccatttt 33902216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 46603776 - 46603842
Alignment:
Q  116 ttttagaaatttaaaatcttatcatttgaagacaacatttatattctaattccattttagacttcttaa 184  Q
    ||||||||||||||||||||||| ||| ||||||  ||||||||| ||||||||||||  |||||||||    
T  46603776 ttttagaaatttaaaatcttatcttttcaagaca--atttatattttaattccatttttaacttcttaa 46603842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 9603519 - 9603576
Alignment:
Q  116 ttttagaaatttaaaatcttatcatttgaagacaacatttatattctaattccatttt 173  Q
    ||||||||||||||||||||||| ||| || |||| |||||| || |||||| |||||    
T  9603519 ttttagaaatttaaaatcttatcttttcaaaacaatatttatgttttaattctatttt 9603576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 9831090 - 9831147
Alignment:
Q  116 ttttagaaatttaaaatcttatcatttgaagacaacatttatattctaattccatttt 173  Q
    ||||||||||||||||||||||| ||| || |||| |||||| || |||||| |||||    
T  9831090 ttttagaaatttaaaatcttatcttttcaaaacaatatttatgttttaattctatttt 9831147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 25070468 - 25070403
Alignment:
Q  92 ttattataaattgagtaatcaatattttagaaatttaaaatcttatcatttgaagacaacatttat 157  Q
    |||||| |||||| ||| |  |||||||||||||||||||||||||| ||||||||||| ||||||    
T  25070468 ttattaaaaattgtgtatttcatattttagaaatttaaaatcttatcttttgaagacaaaatttat 25070403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 176278 - 176221
Alignment:
Q  116 ttttagaaatttaaaatcttatcatttgaagacaacatttatattctaattccatttt 173  Q
    |||||||||||||||||| |||  ||| ||||||||||||||||| ||||| ||||||    
T  176278 ttttagaaatttaaaatcctatattttcaagacaacatttatattttaatttcatttt 176221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 25267091 - 25267031
Alignment:
Q  113 atattttagaaatttaaaatcttatcatttgaagacaacatttatattctaattccatttt 173  Q
    ||||| |||||||||||||||||||||||| ||||||  ||||||  | ||||||||||||    
T  25267091 atattatagaaatttaaaatcttatcatttcaagacataatttatgatttaattccatttt 25267031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 7802030 - 7802089
Alignment:
Q  113 atattttagaaatttaaaatcttatcatttgaagacaacatttatattctaattccatttt 173  Q
    |||||||||||||||||||| ||||| ||| ||||||| ||||  ||| ||||||||||||    
T  7802030 atattttagaaatttaaaattttatc-ttttaagacaaaatttgcattttaattccatttt 7802089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 35075890 - 35075930
Alignment:
Q  110 tcaatattttagaaatttaaaatcttatcatttgaagacaa 150  Q
    |||||||| |||||||||||||||||||| ||| |||||||    
T  35075890 tcaatattctagaaatttaaaatcttatcttttcaagacaa 35075930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University