View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3134_low_11 (Length: 240)
Name: NF3134_low_11
Description: NF3134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3134_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 490228 - 490011
Alignment:
| Q |
5 |
caaattttgttgtctttatttctatgtaacactgcatactaggctattgctgttgtacttttctgcagacagcttaactaaacaagtcctacattgagca |
104 |
Q |
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| T |
490228 |
caaattttgttgtctttatttctatgtaacactgcatactaggctattgctgttatacttttctgcaggcagcttaactaaacaagtcctacattgagca |
490129 |
T |
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| Q |
105 |
taagttgagaagccaaagacattttgcttgtattaagagataatcatctaatagcacaaatgccaccagctctcaaaagtataaactcagtcatcttcat |
204 |
Q |
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| T |
490128 |
taagttgagaagccaaagacattttgcttgtattaagagataatcatctaatagcacaaatgccaccagctctcaaaagtataaactcagtcatcttcat |
490029 |
T |
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| Q |
205 |
ttgtacaactaggacagt |
222 |
Q |
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|||||||||||||||||| |
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| T |
490028 |
ttgtacaactaggacagt |
490011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 493014 - 492930
Alignment:
| Q |
63 |
ttttctgcagacagcttaactaaacaagtcctacattgagcataagttgagaagccaaagacattttgcttgtattaagagataa |
147 |
Q |
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||||| |||||||||||||||| || |||||||||| |||||||||||| ||||| |||| |||||| |||||| |||||||| |
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| T |
493014 |
ttttcagcagacagcttaactatacgggtcctacattaagcataagttgaaaagcctaagatattttgactgtatttagagataa |
492930 |
T |
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