View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3134_low_13 (Length: 239)
Name: NF3134_low_13
Description: NF3134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3134_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 51582208 - 51581991
Alignment:
| Q |
5 |
actcaattgtaattttgtaattgttagatgattaacaatatttgactttaatcgtaactacttttaaagcaacaaacgtgaatggttgagatttgctgac |
104 |
Q |
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| T |
51582208 |
actcaattgtaattttgtaattgttagatgattaacaatatttgactttaatcgtaactacttttaaagtaacaaacgtgaatggttgagatttgctgac |
51582109 |
T |
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| Q |
105 |
agtgtaaatgttttacaccgatagtgcatagcaattaaactctataacgaattcaagtgtaaattagttgaagtttgatagatcaggtaatgcagaagaa |
204 |
Q |
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| T |
51582108 |
agtgtaaatgttttacaccgatagtgcatagcaattaaactctataacgaattcaagtgtaaattagttgaagtttgatagatcaggtaatgcagaagaa |
51582009 |
T |
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| Q |
205 |
tgcatagtaaacatgatc |
222 |
Q |
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| T |
51582008 |
tgcatagtaaacatgatc |
51581991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 73
Target Start/End: Complemental strand, 37848453 - 37848424
Alignment:
| Q |
44 |
atttgactttaatcgtaactacttttaaag |
73 |
Q |
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| T |
37848453 |
atttgactttaatcgtaactacttttaaag |
37848424 |
T |
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