View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3134_low_14 (Length: 238)

Name: NF3134_low_14
Description: NF3134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3134_low_14
NF3134_low_14
[»] chr3 (17 HSPs)
chr3 (18-126)||(40640565-40640673)
chr3 (18-126)||(38392559-38392667)
chr3 (18-126)||(45879429-45879537)
chr3 (18-126)||(49359559-49359667)
chr3 (18-121)||(7568650-7568753)
chr3 (18-94)||(44880832-44880908)
chr3 (17-126)||(19606844-19606953)
chr3 (22-126)||(47930602-47930705)
chr3 (18-123)||(32180680-32180783)
chr3 (18-76)||(42204405-42204463)
chr3 (18-81)||(18272155-18272218)
chr3 (18-70)||(53811907-53811959)
chr3 (18-81)||(5124726-5124789)
chr3 (18-126)||(4556549-4556662)
chr3 (87-126)||(40552396-40552435)
chr3 (18-81)||(54606760-54606823)
chr3 (46-136)||(26000523-26000612)
[»] chr2 (15 HSPs)
chr2 (18-126)||(41643881-41643989)
chr2 (19-126)||(18947530-18947637)
chr2 (18-120)||(6177790-6177892)
chr2 (18-103)||(19073390-19073475)
chr2 (18-94)||(18779332-18779408)
chr2 (18-123)||(27138952-27139056)
chr2 (19-135)||(42005389-42005503)
chr2 (48-134)||(39788538-39788624)
chr2 (18-126)||(34441854-34441960)
chr2 (18-103)||(18059293-18059378)
chr2 (18-94)||(15650889-15650965)
chr2 (18-126)||(30844853-30844964)
chr2 (18-86)||(45414327-45414395)
chr2 (18-81)||(58080-58143)
chr2 (22-126)||(43446393-43446501)
[»] chr7 (10 HSPs)
chr7 (18-126)||(22955243-22955351)
chr7 (18-119)||(37854225-37854326)
chr7 (18-134)||(4902341-4902457)
chr7 (18-126)||(23402302-23402410)
chr7 (22-122)||(8133494-8133596)
chr7 (18-105)||(7742949-7743036)
chr7 (18-103)||(4618686-4618771)
chr7 (17-94)||(49002267-49002344)
chr7 (18-93)||(5781560-5781633)
chr7 (18-76)||(19786343-19786401)
[»] chr5 (12 HSPs)
chr5 (18-134)||(36055805-36055921)
chr5 (18-126)||(22616503-22616610)
chr5 (18-135)||(10237414-10237531)
chr5 (18-94)||(31878424-31878500)
chr5 (18-136)||(21320750-21320868)
chr5 (18-82)||(25653637-25653701)
chr5 (18-94)||(41417510-41417586)
chr5 (18-81)||(26411351-26411414)
chr5 (18-126)||(33163522-33163632)
chr5 (18-81)||(33752979-33753042)
chr5 (18-81)||(33848618-33848681)
chr5 (18-67)||(10053291-10053340)
[»] chr6 (6 HSPs)
chr6 (18-126)||(19631758-19631866)
chr6 (25-103)||(4102864-4102942)
chr6 (18-126)||(11084085-11084191)
chr6 (47-110)||(30338501-30338564)
chr6 (18-126)||(26301856-26301962)
chr6 (18-59)||(34993907-34993948)
[»] chr1 (11 HSPs)
chr1 (18-109)||(10758231-10758322)
chr1 (18-119)||(16127536-16127637)
chr1 (18-126)||(13876850-13876958)
chr1 (18-134)||(27118331-27118447)
chr1 (18-126)||(16132484-16132592)
chr1 (18-78)||(28012123-28012183)
chr1 (18-81)||(15964154-15964217)
chr1 (22-94)||(25943239-25943311)
chr1 (26-126)||(34491444-34491548)
chr1 (18-87)||(421441-421510)
chr1 (18-66)||(31805015-31805063)
[»] chr4 (16 HSPs)
chr4 (17-126)||(9743597-9743706)
chr4 (18-134)||(2704513-2704627)
chr4 (18-126)||(2266787-2266895)
chr4 (18-92)||(1012339-1012413)
chr4 (179-238)||(1425490-1425550)
chr4 (18-135)||(51204579-51204700)
chr4 (18-121)||(54995730-54995833)
chr4 (18-126)||(17612344-17612451)
chr4 (18-126)||(20097418-20097530)
chr4 (18-80)||(22756862-22756924)
chr4 (18-121)||(28293164-28293271)
chr4 (64-126)||(33255508-33255570)
chr4 (18-69)||(22729777-22729828)
chr4 (18-82)||(33036133-33036196)
chr4 (18-71)||(5812631-5812684)
chr4 (18-62)||(51959922-51959966)
[»] scaffold0200 (1 HSPs)
scaffold0200 (18-103)||(24748-24833)
[»] chr8 (7 HSPs)
chr8 (18-134)||(4108845-4108959)
chr8 (23-126)||(23176701-23176802)
chr8 (46-126)||(8151371-8151451)
chr8 (18-126)||(35735911-35736023)
chr8 (20-79)||(3038462-3038521)
chr8 (18-71)||(1835316-1835369)
chr8 (18-71)||(1879157-1879210)
[»] scaffold0050 (1 HSPs)
scaffold0050 (18-80)||(5645-5707)
[»] scaffold0312 (1 HSPs)
scaffold0312 (18-87)||(9062-9131)


Alignment Details
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 40640565 - 40640673
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||| ||||||    
T  40640565 aaatgtgcaatacaccatataatatgacgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttcaccagaaaagtcattctcatgac 40640664  T
Q  118 ttcaccata 126  Q
    |||||||||    
T  40640665 ttcaccata 40640673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 38392559 - 38392667
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    |||||||||||||| |||||||| ||   |||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||| |||| ||||||    
T  38392559 aaatgtgcaatacatcatataatctgtcatgacatggattaaatacacaaatgttcaatgactgaccatttaacttcaccaaaaaagtcattctcatgac 38392658  T
Q  118 ttcaccata 126  Q
    |||||||||    
T  38392659 ttcaccata 38392667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 45879429 - 45879537
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||| |||||||||||  ||| |||||| |||| ||||||    
T  45879429 aaatgtgcaatacaccatataatctgacgtggcatggattaaatacacaaatgctcaatgattggccatttaactttaccagaaaagtcattctcatgac 45879528  T
Q  118 ttcaccata 126  Q
    |||| ||||    
T  45879529 ttcagcata 45879537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 49359559 - 49359667
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    |||||||||||||| |||||||||||| ||| ||||||||||||||||||||| |||||||||| |||||||||||| | |||||||| |||  ||||||    
T  49359559 aaatgtgcaatacatcatataatatgacgtgtcatggattaaatacacaaatgttcaatgattggccatttaacttcacaaaaaaagtcattttcatgac 49359658  T
Q  118 ttcaccata 126  Q
    |||||||||    
T  49359659 ttcaccata 49359667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 7568650 - 7568753
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    |||||||||||||  |||||||| ||| |||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||| |||  ||||||    
T  7568650 aaatgtgcaatactgcatataatctgacgtgacatgaattaaatacacaaatgctcaatgatttaccatttaacttcaccaaaaaagtaattttcatgac 7568749  T
Q  118 ttca 121  Q
    ||||    
T  7568750 ttca 7568753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 44880908 - 44880832
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttc 94  Q
    |||||||||||||||||||| || ||| ||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  44880908 aaatgtgcaatacaccatattatctgacgtgacatggattaaatacataaatgttcaatgattgaccatttaacttc 44880832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 19606844 - 19606953
Alignment:
Q  17 aaaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatga 116  Q
    ||||||| |||||||||||||||| ||| ||||| || |||||||||||||||||||||| ||||  ||||||||||| ||| |||||| |||   || |    
T  19606844 aaaatgttcaatacaccatataatctgacgtgacctgaattaaatacacaaatgctcaatcattggtcatttaacttcaccagaaaagtcatttttataa 19606943  T
Q  117 cttcaccata 126  Q
    ||||||||||    
T  19606944 cttcaccata 19606953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 47930602 - 47930705
Alignment:
Q  22 gtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgacttca 121  Q
    |||||||||||||||||||  ||| | |||||||||||||||||||||| ||||||||||  ||||||||||| ||| |||| | |||  ||||||||||    
T  47930602 gtgcaatacaccatataatc-gatataacatggattaaatacacaaatgttcaatgattggtcatttaacttcaccagaaaaatcattttcatgacttca 47930700  T
Q  122 ccata 126  Q
    |||||    
T  47930701 ccata 47930705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 32180680 - 32180783
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    |||||||||||||  | |||||| ||| |||||||  |||||||||||||||||||||||||| ||||||||||||| | | |||||| |||| ||| ||    
T  32180680 aaatgtgcaatac--cgtataatctgacgtgacataaattaaatacacaaatgctcaatgattaaccatttaacttcactagaaaagtcattctcataac 32180777  T
Q  118 ttcacc 123  Q
    ||||||    
T  32180778 ttcacc 32180783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 42204463 - 42204405
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaat 76  Q
    |||| ||||||||||||||||||  |||||||||| |||||||||||||||||||||||    
T  42204463 aaatatgcaatacaccatataatccgatgtgacatagattaaatacacaaatgctcaat 42204405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 18272155 - 18272218
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattg 81  Q
    ||||||||||||||||||||||| |||  ||| ||| |||||||||||||||| ||||||||||    
T  18272155 aaatgtgcaatacaccatataatctgacttgatatgaattaaatacacaaatgttcaatgattg 18272218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 53811907 - 53811959
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatg 70  Q
    ||||||| ||||||||||||||| ||| ||||||||||||||||||| |||||    
T  53811907 aaatgtggaatacaccatataatctgacgtgacatggattaaatacataaatg 53811959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 5124789 - 5124726
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattg 81  Q
    |||||||||||||||| |||||| |||  ||||||  |||||||||||||||| ||||||||||    
T  5124789 aaatgtgcaatacaccgtataatttgacatgacatacattaaatacacaaatgttcaatgattg 5124726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 4556662 - 4556549
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatg----gattaaatacacaaatgctcaatgattgaccat-ttaacttctccaaaaaagttattccc 112  Q
    ||||||||||||| ||||||||| ||| ||||||||     ||||||||||||||| |||||||||||  |||  ||||||| | | |||||| |||  |    
T  4556662 aaatgtgcaatacgccatataatctgacgtgacatgaattaattaaatacacaaatactcaatgattggtcatagtaacttcacgagaaaagtcattttc 4556563  T
Q  113 atgacttcaccata 126  Q
    ||||||||||||||    
T  4556562 atgacttcaccata 4556549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 40552396 - 40552435
Alignment:
Q  87 ttaacttctccaaaaaagttattcccatgacttcaccata 126  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  40552396 ttaacttctccaaaaaagtcattctcatgacttcaccata 40552435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 54606823 - 54606760
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattg 81  Q
    |||||||||||||||| ||| || |||  ||||||  |||||||||||||||| ||||||||||    
T  54606823 aaatgtgcaatacaccgtatgatttgacatgacatacattaaatacacaaatgttcaatgattg 54606760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 26000612 - 26000523
Alignment:
Q  46 gtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgacttcaccataaaagtttctt 136  Q
    |||||||| |||||||||||||||| ||||| || || ||||||| ||  |||||||| |||||  ||| |||| ||||||||| ||||||    
T  26000612 gtgacatgaattaaatacacaaatgttcaataatcgatcatttaattttaccaaaaaa-ttattttcataactttaccataaaattttctt 26000523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 41643989 - 41643881
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    ||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||  ||||||    
T  41643989 aaatgtgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctcaatgattgaccatttaacttcaccaaaaaagtcattatcatgac 41643890  T
Q  118 ttcaccata 126  Q
    |||||||||    
T  41643889 ttcaccata 41643881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 18947530 - 18947637
Alignment:
Q  19 aatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgact 118  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||  |||||||    
T  18947530 aatgtacaatacaccatataatctgacgtgacatggattaaatacacaaatgttcaatgattgaccatttaacttcaccagaaaagttattttcatgact 18947629  T
Q  119 tcaccata 126  Q
    ||||||||    
T  18947630 tcaccata 18947637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 6177892 - 6177790
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    ||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||| |||| ||||||    
T  6177892 aaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctcaatgattgaccatttaacttcaccagaaaagtcattctcatgac 6177793  T
Q  118 ttc 120  Q
    |||    
T  6177792 ttc 6177790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 19073475 - 19073390
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaa 103  Q
    ||||||| ||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  19073475 aaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatgattgaccatttaacttcaccaaaaaa 19073390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 18779332 - 18779408
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttc 94  Q
    |||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18779332 aaatgtgcaataaaccatataatctgatgtgacatgaattaaatacacaaatgctcaatgattgaccatttaacttc 18779408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 27138952 - 27139056
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    |||| ||||||||||| |||||| ||| |||||||||||||| |||||||||| |||||||||| ||||||||||||  ||||||||| |||  ||||||    
T  27138952 aaatatgcaatacaccgtataatctgacgtgacatggattaa-tacacaaatgatcaatgattggccatttaacttcatcaaaaaagtcattttcatgac 27139050  T
Q  118 ttcacc 123  Q
    ||||||    
T  27139051 ttcacc 27139056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 42005503 - 42005389
Alignment:
Q  19 aatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgact 118  Q
    ||||||||||||||||||||||  || ||||||||||||||||| ||||||  |||||| |||| ||||||||||| |||||||| | |||  |||||||    
T  42005503 aatgtgcaatacaccatataat--gacgtgacatggattaaataaacaaatattcaatggttgatcatttaacttcaccaaaaaaatcattttcatgact 42005406  T
Q  119 tcaccataaaagtttct 135  Q
    |||||||| || |||||    
T  42005405 tcaccatagaattttct 42005389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 39788538 - 39788624
Alignment:
Q  48 gacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgacttcaccataaaagtttc 134  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||| | | |||||| ||||  ||||||||||||||||| ||||    
T  39788538 gacatggattaaatacacaaatgctcaatgattgactatttgacttcactagaaaagtcattcttatgacttcaccataaaattttc 39788624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 34441854 - 34441960
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    |||||||||||||||||||||||  || |||||||| |||||||||||||||  ||||| ||||  ||||||||||  |||||||||| |||  ||||||    
T  34441854 aaatgtgcaatacaccatataat--gacgtgacatgaattaaatacacaaatattcaataattggtcatttaactttaccaaaaaagtcattttcatgac 34441951  T
Q  118 ttcaccata 126  Q
    |||||||||    
T  34441952 ttcaccata 34441960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 18059293 - 18059378
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaa 103  Q
    |||| |||||||||||||||||| |||  ||||||| |||||||||||||||  ||||| |||||||||||||| || ||||||||    
T  18059293 aaatatgcaatacaccatataatctgacatgacatgaattaaatacacaaatattcaataattgaccatttaacatcaccaaaaaa 18059378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 15650965 - 15650889
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttc 94  Q
    ||||||| ||||||||||||||| | | |||| |||||||||||||||||||  | |||||||||| ||||||||||    
T  15650965 aaatgtgaaatacaccatataatcttacgtgatatggattaaatacacaaatatttaatgattgacgatttaacttc 15650889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 30844964 - 30844853
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccat----ttaacttctccaaaaaagttattccca 113  Q
    |||||||||||| | |||||||| ||| |||||||||||||||||||  |||||||||||||||| |||    |||||||| ||  |||||| |||| ||    
T  30844964 aaatgtgcaatatatcatataatctgacgtgacatggattaaataca-gaatgctcaatgattgatcatgggattaacttcaccttaaaagtcattctca 30844866  T
Q  114 tgacttcaccata 126  Q
    | |||||||||||    
T  30844865 taacttcaccata 30844853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 45414327 - 45414395
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccat 86  Q
    |||| |||||| ||||||||| | ||| ||||||| ||||||||| ||||||||||||| |||||||||    
T  45414327 aaatatgcaatgcaccatatattctgacgtgacatagattaaatatacaaatgctcaataattgaccat 45414395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 58143 - 58080
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattg 81  Q
    ||||||||||||||||||||||| |||| ||||||| |||||||||| | ||| | ||||||||    
T  58143 aaatgtgcaatacaccatataatttgatctgacatgaattaaatacagatatgttaaatgattg 58080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 43446393 - 43446501
Alignment:
Q  22 gtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatt----taacttctccaaaaaagttattcccatgac 117  Q
    |||||| |||||||||||| ||| |||  ||| |||| |||| |||||| ||||||||||| ||||    ||||||| || ||||||| |||| ||||||    
T  43446393 gtgcaacacaccatataatttgacgtggtatgcattagatacgcaaatgttcaatgattgatcattctcataacttcaccgaaaaagtcattctcatgac 43446492  T
Q  118 ttcaccata 126  Q
    |||||||||    
T  43446493 ttcaccata 43446501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 22955243 - 22955351
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| |||||| |||| ||| ||    
T  22955243 aaatgtgcaatacaccatataatttgacgtgacatggattaaatacacaaatgttcaataattgaccatttaacttcaccagaaaagtcattctcattac 22955342  T
Q  118 ttcaccata 126  Q
    |||||||||    
T  22955343 ttcaccata 22955351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 37854225 - 37854326
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| |||||| |||| ||||||    
T  37854225 aaatgtgcaatacaccatataatgtgacgtgacatggattaaatacacaaatgctcaataattgaccatttaatttcaccagaaaagtcattctcatgac 37854324  T
Q  118 tt 119  Q
    ||    
T  37854325 tt 37854326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 4902457 - 4902341
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||| ||||| ||||||| ||| |||||||| |||||  ||||||    
T  4902457 aaatgtgctatacaccatataatctgacgtgacatggattaaatacataaatgctcaataattgatcatttaaattcaccaaaaaaattattttcatgac 4902358  T
Q  118 ttcaccataaaagtttc 134  Q
    |||||||||||| ||||    
T  4902357 ttcaccataaaattttc 4902341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 23402302 - 23402410
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    ||||| ||||||||||||||||||||| |||||||| |||||||||||| ||| ||||||||||||||||||||||| ||| |||||| |||| ||||||    
T  23402302 aaatgcgcaatacaccatataatatgacgtgacatgaattaaatacacagatgttcaatgattgaccatttaacttcaccagaaaagtcattctcatgac 23402401  T
Q  118 ttcaccata 126  Q
    ||| |||||    
T  23402402 ttcgccata 23402410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 8133494 - 8133596
Alignment:
Q  22 gtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgacca--tttaacttctccaaaaaagttattcccatgactt 119  Q
    ||||||||||||||||||| ||| ||| | || |||||||||||||||||| ||||||||| ||  ||||||||| |||||||||||||||  |||||||    
T  8133494 gtgcaatacaccatataatctgacgtgtcttgaattaaatacacaaatgcttaatgattgatcatttttaacttcaccaaaaaagttattcttatgactt 8133593  T
Q  120 cac 122  Q
    |||    
T  8133594 cac 8133596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 7743036 - 7742949
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagt 105  Q
    |||||| |||||||||||||||| | | ||||||| |||||||||||||||| |||||||||||| ||||| |||||  |||||||||    
T  7743036 aaatgtacaatacaccatataatctaacgtgacatagattaaatacacaaatactcaatgattgatcattttacttcatcaaaaaagt 7742949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 4618686 - 4618771
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaa 103  Q
    ||||||||||||||||||||||| ||| | |||||| |||||||||||||||| |||||||||   ||||||||||  ||||||||    
T  4618686 aaatgtgcaatacaccatataatttgaagcgacatgaattaaatacacaaatgttcaatgattagtcatttaactttaccaaaaaa 4618771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 49002344 - 49002267
Alignment:
Q  17 aaaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttc 94  Q
    |||||||||||||||||||||||| |||| ||  ||||||||||||||||||| |||||||||||  ||||| |||||    
T  49002344 aaaatgtgcaatacaccatataatctgatatggtatggattaaatacacaaatactcaatgattgttcatttcacttc 49002267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 5781633 - 5781560
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaactt 93  Q
    |||| ||||||||||||||||||  || ||||||||||||||||||||||||  | ||||||||| ||||||||||    
T  5781633 aaatatgcaatacaccatataat--gacgtgacatggattaaatacacaaatatttaatgattgatcatttaactt 5781560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 19786401 - 19786343
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaat 76  Q
    ||||||||||| || |||||||||||| ||| |||| ||||||||||||||||||||||    
T  19786401 aaatgtgcaatgcatcatataatatgacgtggcatgaattaaatacacaaatgctcaat 19786343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 36055805 - 36055921
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    |||||||||||||||||| |||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||||| | | |||||| |||| ||||||    
T  36055805 aaatgtgcaatacaccatgtaatctgatgcgacatgaattaaattcacaaatgctcaatgattgaccatttaacttcacaagaaaagtcattctcatgac 36055904  T
Q  118 ttcaccataaaagtttc 134  Q
     ||||||||||| ||||    
T  36055905 atcaccataaaattttc 36055921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 22616610 - 22616503
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||  ||||||||||||||| |||||||||||| ||| |||||| |||  ||||||    
T  22616610 aaatgtccaatacaccatataatatgacgtgacatggattaaataca-taatgctcaatgattggccatttaacttcaccagaaaagtcattttcatgac 22616512  T
Q  118 ttcaccata 126  Q
    |||||||||    
T  22616511 ttcaccata 22616503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 10237531 - 10237414
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    ||||| ||||||||||||||||| ||| |||| ||| |||||||||||||||||||||||||||||||||||||||| | | |||||| |||  ||||||    
T  10237531 aaatgcgcaatacaccatataatctgacgtgaaatgaattaaatacacaaatgctcaatgattgaccatttaacttcactagaaaagtcattttcatgac 10237432  T
Q  118 ttcaccataaaagtttct 135  Q
    ||||| ||| || |||||    
T  10237431 ttcacaatagaattttct 10237414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 31878500 - 31878424
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttc 94  Q
    ||||||||||||||||||||||| ||| |||||||| |||||||||||||||||| |||||||||| ||||||||||    
T  31878500 aaatgtgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgcttaatgattgacaatttaacttc 31878424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 21320868 - 21320750
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    |||| |||||||||||||||||| ||||||| |||   |||||||||| |||||||||||||||| |||||||||||  ||||||||| |||   || ||    
T  21320868 aaatatgcaatacaccatataatctgatgtggcattagttaaatacacgaatgctcaatgattgatcatttaacttcatcaaaaaagtcatttttattac 21320769  T
Q  118 ttcaccataaaagtttctt 136  Q
    ||||||||| || ||||||    
T  21320768 ttcaccatagaattttctt 21320750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 25653701 - 25653637
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattga 82  Q
    ||||||||||||||||||| ||| ||| |||| ||| ||||||||||||||| ||||||||||||    
T  25653701 aaatgtgcaatacaccatacaatctgacgtgatatgaattaaatacacaaatactcaatgattga 25653637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 41417510 - 41417586
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttc 94  Q
    |||| |||||||||||||||||| |||  ||| ||  |||||||||||||||| ||||||||| |||||||||||||    
T  41417510 aaatttgcaatacaccatataatctgacatgatataaattaaatacacaaatgttcaatgattaaccatttaacttc 41417586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 26411414 - 26411351
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattg 81  Q
    |||||| |||||||||||||||| ||| |||||||| |||||||||| ||||  ||||||||||    
T  26411414 aaatgtacaatacaccatataatttgacgtgacatgtattaaatacataaatattcaatgattg 26411351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 33163632 - 33163522
Alignment:
Q  18 aaatgtgcaatacaccatata--atatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatg 115  Q
    |||||||||||||||||||||  || ||||||| ||| ||||||| ||||||||| | |||||||   ||||||||| | || ||||| | |||  ||||    
T  33163632 aaatgtgcaatacaccatatataatctgatgtggcatagattaaacacacaaatgtttaatgattagacatttaactccaccgaaaaaatcattttcatg 33163533  T
Q  116 acttcaccata 126  Q
    |||||||||||    
T  33163532 acttcaccata 33163522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 33752979 - 33753042
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattg 81  Q
    |||||||||||| ||| |||||| ||| ||||||| ||||||||||||||||| | ||||||||    
T  33752979 aaatgtgcaataaaccctataatctgaagtgacattgattaaatacacaaatggtaaatgattg 33753042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 33848618 - 33848681
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattg 81  Q
    |||||||||||| | | |||||| ||| ||||||| ||||||||||||||||||| ||||||||    
T  33848618 aaatgtgcaataaatcctataatctgaagtgacattgattaaatacacaaatgctaaatgattg 33848681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 10053340 - 10053291
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaa 67  Q
    ||||||||||||||| |||||||  || || |||||||||||||||||||    
T  10053340 aaatgtgcaatacacgatataatccgacgtaacatggattaaatacacaa 10053291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 19631866 - 19631758
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    ||||||||||||||||||||||| | | ||||||||||||||||||||||||| ||||||||||  ||||||||||| ||| |||||| ||||  |||||    
T  19631866 aaatgtgcaatacaccatataatctaacgtgacatggattaaatacacaaatgttcaatgattggtcatttaacttcaccagaaaagtcattcttatgac 19631767  T
Q  118 ttcaccata 126  Q
    |||||||||    
T  19631766 ttcaccata 19631758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 4102864 - 4102942
Alignment:
Q  25 caatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaa 103  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||   ||||||||||| ||||||||    
T  4102864 caatacaccatataatatgatgtggcatagattaaatacacaaatgttcaatgattagacatttaacttcaccaaaaaa 4102942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 11084085 - 11084191
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    ||||||| |||||||||||||||  || ||||||||||||||||||| ||||  ||||||||||  ||||||||||  ||| ||||||||||  ||||||    
T  11084085 aaatgtgtaatacaccatataat--gacgtgacatggattaaatacataaatattcaatgattggtcatttaactttaccagaaaagttattttcatgac 11084182  T
Q  118 ttcaccata 126  Q
    |||||||||    
T  11084183 ttcaccata 11084191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 110
Target Start/End: Complemental strand, 30338564 - 30338501
Alignment:
Q  47 tgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattc 110  Q
    ||||||||||||||| || ||||||||||||||| | ||||||||||| | |||||||| ||||    
T  30338564 tgacatggattaaatgcataaatgctcaatgattaatcatttaacttcactaaaaaagtcattc 30338501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 26301856 - 26301962
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    |||| ||||||||| ||||||||  || |||||||| |||||||||| ||||  ||||||||||  ||||||||||| | |||||| | |||   |||||    
T  26301856 aaatatgcaatacatcatataat--gacgtgacatgaattaaatacataaatattcaatgattggtcatttaacttcacgaaaaaaatcatttttatgac 26301953  T
Q  118 ttcaccata 126  Q
    |||||||||    
T  26301954 ttcaccata 26301962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 34993948 - 34993907
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaa 59  Q
    ||||||||||||||||||||||| |||||||||||| |||||    
T  34993948 aaatgtgcaatacaccatataatctgatgtgacatgaattaa 34993907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 10758231 - 10758322
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttatt 109  Q
    |||||| |||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||| | ||||| ||||||    
T  10758231 aaatgttcaatacaccatataatctgatgtggcatgaattaaatacacaaatgctcaatgattgaccatttaacttcactaaaaatgttatt 10758322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 16127637 - 16127536
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    |||||||||||||| |||||||| ||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||| |||  ||||||    
T  16127637 aaatgtgcaatacatcatataatctgacgtgtcatggattaaatacacaaatgatcaatgattgaccatttaacttcaccagaaaagtcattttcatgac 16127538  T
Q  118 tt 119  Q
    ||    
T  16127537 tt 16127536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 13876850 - 13876958
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    ||||||| |||||||||||| |||||| ||| ||| |||||||||||||||| |||||||||||| ||||||||||| ||| |||||| |||  ||| ||    
T  13876850 aaatgtgtaatacaccatatgatatgacgtggcattgattaaatacacaaatactcaatgattgatcatttaacttcaccataaaagtcattttcataac 13876949  T
Q  118 ttcaccata 126  Q
    |||||||||    
T  13876950 ttcaccata 13876958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 27118447 - 27118331
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    |||||||||||||| |||||||||||| ||| ||||||||||||||| |||||||| |||||| || |||||||||   ||||||||| |||  ||||||    
T  27118447 aaatgtgcaatacatcatataatatgacgtggcatggattaaatacataaatgctccatgattaactatttaactttatcaaaaaagtcattttcatgac 27118348  T
Q  118 ttcaccataaaagtttc 134  Q
    || | ||||||| ||||    
T  27118347 tttatcataaaattttc 27118331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 16132592 - 16132484
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    |||||||||||||||| |||||| | | ||  ||||||||||||||||||||||||||| |||  |||||||||||| |||||||||| | ||   ||||    
T  16132592 aaatgtgcaatacaccgtataatctcacgttgcatggattaaatacacaaatgctcaataatttgccatttaacttcaccaaaaaagtcaatctattgac 16132493  T
Q  118 ttcaccata 126  Q
    |||||||||    
T  16132492 ttcaccata 16132484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 28012183 - 28012123
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatga 78  Q
    ||||||||||||||||||||||| | |||||||||| ||||||||||||||| ||||||||    
T  28012183 aaatgtgcaatacaccatataatttaatgtgacatgcattaaatacacaaatactcaatga 28012123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 15964217 - 15964154
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattg 81  Q
    ||||||||||||||| ||||||| ||| ||||||| ||||||||||||||||||| ||||||||    
T  15964217 aaatgtgcaatacactatataatttgacgtgacatagattaaatacacaaatgcttaatgattg 15964154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 25943311 - 25943239
Alignment:
Q  22 gtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttc 94  Q
    ||||||||||||||||||| ||| ||||| | ||||||||| || |||||||||| ||||| |||||||||||    
T  25943311 gtgcaatacaccatataatctgacgtgacgtcgattaaataaactaatgctcaataattgatcatttaacttc 25943239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 126
Target Start/End: Original strand, 34491444 - 34491548
Alignment:
Q  26 aatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccat----ttaacttctccaaaaaagttattcccatgacttca 121  Q
    |||||| | |||||| ||||||| ||||||||||||||||||||| | ||||||||| |||    ||||||||  || |||| |||||| ||| ||||||    
T  34491444 aatacatcttataatctgatgtggcatggattaaatacacaaatgtttaatgattgatcatagaattaacttcatcagaaaaattattctcatcacttca 34491543  T
Q  122 ccata 126  Q
    |||||    
T  34491544 ccata 34491548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 421510 - 421441
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatt 87  Q
    |||||||||||| ||  |||||| |||  ||||||  |||||||||||||||| ||||||||||| ||||    
T  421510 aaatgtgcaataaactgtataatttgacatgacatacattaaatacacaaatgttcaatgattgatcatt 421441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 31805015 - 31805063
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacaca 66  Q
    ||||||||||||||||||||||| | | ||| ||| |||||||||||||    
T  31805015 aaatgtgcaatacaccatataatctaacgtggcatagattaaatacaca 31805063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 9743706 - 9743597
Alignment:
Q  17 aaaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatga 116  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||| ||||  ||||||| ||| |||||||||| |||  |||||    
T  9743706 aaaatgtgcaatacaccatataatatgacgttacatggattaaatacacaaatgttcaataattggtcatttaatttcaccaaaaaagtcatttacatga 9743607  T
Q  117 cttcaccata 126  Q
    ||| ||||||    
T  9743606 ctttaccata 9743597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 2704627 - 2704513
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    |||||||||||||||||||||||  || ||||| || |||||||||||||||  ||||||||||| ||||||||||| ||| |||||| |||  ||||||    
T  2704627 aaatgtgcaatacaccatataat--gacgtgacgtgaattaaatacacaaatattcaatgattgatcatttaacttcaccagaaaagtcattttcatgac 2704530  T
Q  118 ttcaccataaaagtttc 134  Q
    |||||||||||| ||||    
T  2704529 ttcaccataaaattttc 2704513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 2266787 - 2266895
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    ||||||| |||||||||| |||| | | ||| |||||||||||||||||||||||||||||||||| |||||||||| | | |||||| |||  ||||||    
T  2266787 aaatgtgtaatacaccatgtaatctaacgtggcatggattaaatacacaaatgctcaatgattgacgatttaacttcactagaaaagtcattatcatgac 2266886  T
Q  118 ttcaccata 126  Q
    |||||||||    
T  2266887 ttcaccata 2266895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 1012413 - 1012339
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaact 92  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||| |||||| |||||||||||    
T  1012413 aaatgtgcaatacaccatataatctgacgtgacatggattaaatacacaaatactcgatgattaaccatttaact 1012339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 1425550 - 1425490
Alignment:
Q  179 tttaaagcgataaagacaaatagtt-gtcaatagaaaagttcaagtaagacatcgagttat 238  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1425550 tttaaagcgataaagacaaatagtttgtcaatagaaaagttcaagtaagacatcgagttat 1425490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 51204700 - 51204579
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccat----ttaacttctccaaaaaagttattccca 113  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| |||    |||||||| ||| |||||| |||   |    
T  51204700 aaatgtgcaatgcaccatataatctgatgtgacatggattaaatacacaaaagctcaataattgatcatagggttaacttcaccagaaaagtcattttta 51204601  T
Q  114 tgacttcaccataaaagtttct 135  Q
    ||||||||||||| || |||||    
T  51204600 tgacttcaccatagaattttct 51204579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 54995730 - 54995833
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    |||||||||||||| |||||||  |||  ||||||||||||||||| ||||||  ||||||||| |||||||||||| |||||||||| |||  ||||||    
T  54995730 aaatgtgcaatacatcatataacctgacatgacatggattaaatacgcaaatgtacaatgattggccatttaacttcaccaaaaaagtcattatcatgac 54995829  T
Q  118 ttca 121  Q
    ||||    
T  54995830 ttca 54995833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 17612451 - 17612344
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    ||||||| |||||| ||| |||| ||  |||||||| ||||| |||||||||||| |||||||||||||||||||||   |||||| | |||| ||||||    
T  17612451 aaatgtgaaatacatcatttaatctggcgtgacatgaattaa-tacacaaatgcttaatgattgaccatttaacttcattaaaaaaatcattctcatgac 17612353  T
Q  118 ttcaccata 126  Q
    |||||||||    
T  17612352 ttcaccata 17612344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 20097418 - 20097530
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccat----ttaacttctccaaaaaagttattccca 113  Q
    |||| |||||||||| ||||||| ||| ||| |||| |||||||||||||||||  ||||||||| |||    |||||||| ||| |||||| |||| ||    
T  20097418 aaatatgcaatacactatataatctgacgtggcatgaattaaatacacaaatgcggaatgattgatcatagggttaacttcaccagaaaagtcattctca 20097517  T
Q  114 tgacttcaccata 126  Q
    |||||||||||||    
T  20097518 tgacttcaccata 20097530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 22756862 - 22756924
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgatt 80  Q
    |||||||||||||||| |||||| ||||||| |||| ||||||||||||||| ||||||||||    
T  22756862 aaatgtgcaatacaccgtataatttgatgtggcatgcattaaatacacaaatactcaatgatt 22756924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 28293164 - 28293271
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccat----ttaacttctccaaaaaagttattccca 113  Q
    |||||||||||||| |||||||| ||||||  |||||||||||||||   || ||||||||||||||||    |||||||| || ||||||| |||| ||    
T  28293164 aaatgtgcaatacatcatataatttgatgtagcatggattaaatacattgatactcaatgattgaccatatggttaacttcaccgaaaaagtcattctca 28293263  T
Q  114 tgacttca 121  Q
    ||||||||    
T  28293264 tgacttca 28293271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 33255570 - 33255508
Alignment:
Q  64 acaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgacttcaccata 126  Q
    ||||||||||||| |||| |||||||||||| |||||||||| |||| | |||||||||||||    
T  33255570 acaaatgctcaataattggccatttaacttcaccaaaaaagtgattctcgtgacttcaccata 33255508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 22729828 - 22729777
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaat 69  Q
    |||||||||||||||| |||||| ||||||| |||| |||||||||||||||    
T  22729828 aaatgtgcaatacaccgtataatttgatgtggcatgcattaaatacacaaat 22729777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 33036133 - 33036196
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattga 82  Q
    ||||||||||||||| ||||||| | | || ||||||||||||||||  ||||||||||||||||    
T  33036133 aaatgtgcaatacacaatataatctaacgtaacatggattaaataca-gaatgctcaatgattga 33036196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 5812684 - 5812631
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgc 71  Q
    |||||| |||||| | ||||||| |||||| ||||| |||||||||||||||||    
T  5812684 aaatgtacaatacgcaatataatttgatgttacatgcattaaatacacaaatgc 5812631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 51959966 - 51959922
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaata 62  Q
    ||||||||||||||||||||||| ||| |||| || |||||||||    
T  51959966 aaatgtgcaatacaccatataatctgacgtgatatagattaaata 51959922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 24748 - 24833
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaa 103  Q
    ||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||| ||| ||| ||||    
T  24748 aaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctcaatgattgaccatttaatttcaccagaaaa 24833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 4108845 - 4108959
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgac 117  Q
    |||||||||||||||||||||||  || ||| |||  |||||||||||||||  ||||||||||  ||||||||||  |||||||||| |||  ||||||    
T  4108845 aaatgtgcaatacaccatataat--gacgtggcattaattaaatacacaaatattcaatgattggtcatttaactttaccaaaaaagtcattttcatgac 4108942  T
Q  118 ttcaccataaaagtttc 134  Q
    |||||||||||| ||||    
T  4108943 ttcaccataaaattttc 4108959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 23176701 - 23176802
Alignment:
Q  23 tgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgacttcac 122  Q
    ||||||||||||||||||  || |||||||| ||||| |||||||||  ||||||||||  ||||||||||| |||||||||| |||  |||||||||||    
T  23176701 tgcaatacaccatataat--gacgtgacatgcattaagtacacaaatattcaatgattggtcatttaacttcaccaaaaaagtcattttcatgacttcac 23176798  T
Q  123 cata 126  Q
    ||||    
T  23176799 cata 23176802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 8151371 - 8151451
Alignment:
Q  46 gtgacatggattaaatacacaaatgctcaatgattgaccatttaacttctccaaaaaagttattcccatgacttcaccata 126  Q
    |||||||||||||||| |||||||  ||||||||||  ||||||||||| |||||||||| |||  ||||||| |||||||    
T  8151371 gtgacatggattaaatgcacaaatattcaatgattggtcatttaacttcaccaaaaaagtcattttcatgactgcaccata 8151451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 35735911 - 35736023
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccat----ttaacttctccaaaaaagttattccca 113  Q
    ||||||||||||||||||||||| | | | ||||   ||||||||||||||||||||||||||   | |    |||||||| |||||||||| ||||  |    
T  35735911 aaatgtgcaatacaccatataatttaacgggacacacattaaatacacaaatgctcaatgattcgtcgtatgattaacttcaccaaaaaagtcattctaa 35736010  T
Q  114 tgacttcaccata 126  Q
    |||||||||||||    
T  35736011 tgacttcaccata 35736023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 3038521 - 3038462
Alignment:
Q  20 atgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgat 79  Q
    |||||||||||||  |||||| ||| |||||||  |||||||| ||||||||||||||||    
T  3038521 atgtgcaatacactgtataatctgacgtgacataaattaaatagacaaatgctcaatgat 3038462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 1835316 - 1835369
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgc 71  Q
    |||||| ||||||||  |||||| |||||||||||  |||||||||||||||||    
T  1835316 aaatgtacaatacacactataatttgatgtgacattcattaaatacacaaatgc 1835369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 1879157 - 1879210
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgc 71  Q
    |||||| ||||||||  |||||| |||||||||||  |||||||||||||||||    
T  1879157 aaatgtacaatacacactataatttgatgtgacattcattaaatacacaaatgc 1879210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 5707 - 5645
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgatt 80  Q
    ||||||||||||||||||||||| | |  ||||||| ||||||||||||||||||||||||||    
T  5707 aaatgtgcaatacaccatataatctaacatgacatgaattaaatacacaaatgctcaatgatt 5645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 9062 - 9131
Alignment:
Q  18 aaatgtgcaatacaccatataatatgatgtgacatggattaaatacacaaatgctcaatgattgaccatt 87  Q
    |||||||||||| ||  |||||| |||  ||||||  |||||||||||||||| ||||||||||| ||||    
T  9062 aaatgtgcaataaactgtataatttgacatgacatacattaaatacacaaatgttcaatgattgatcatt 9131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University