View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3134_low_16 (Length: 227)

Name: NF3134_low_16
Description: NF3134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3134_low_16
NF3134_low_16
[»] scaffold0035 (3 HSPs)
scaffold0035 (9-153)||(80111-80259)
scaffold0035 (9-51)||(84136-84178)
scaffold0035 (164-208)||(84079-84123)
[»] chr5 (17 HSPs)
chr5 (9-153)||(31173923-31174071)
chr5 (9-153)||(27261453-27261601)
chr5 (9-153)||(28396313-28396461)
chr5 (9-153)||(31170181-31170329)
chr5 (11-153)||(28392367-28392513)
chr5 (7-153)||(41882131-41882281)
chr5 (9-153)||(41873353-41873502)
chr5 (9-129)||(27265537-27265660)
chr5 (9-95)||(24089423-24089513)
chr5 (57-134)||(20892996-20893073)
chr5 (57-134)||(20914470-20914547)
chr5 (157-208)||(27265446-27265497)
chr5 (86-140)||(24090378-24090432)
chr5 (172-208)||(31170356-31170392)
chr5 (172-208)||(41873537-41873573)
chr5 (57-108)||(20922135-20922187)
chr5 (172-208)||(27261640-27261676)
[»] chr8 (28 HSPs)
chr8 (9-153)||(1656196-1656344)
chr8 (9-153)||(6334135-6334283)
chr8 (9-153)||(14033420-14033568)
chr8 (13-153)||(36797752-36797896)
chr8 (9-153)||(417450-417599)
chr8 (9-153)||(6337891-6338039)
chr8 (9-153)||(24516865-24517013)
chr8 (9-153)||(36803901-36804049)
chr8 (9-153)||(14029654-14029801)
chr8 (9-153)||(23712631-23712778)
chr8 (7-153)||(12876996-12877146)
chr8 (9-148)||(1659902-1660044)
chr8 (9-148)||(413457-413597)
chr8 (9-137)||(12880581-12880713)
chr8 (9-118)||(37404553-37404666)
chr8 (61-153)||(27276718-27276812)
chr8 (108-153)||(24512923-24512968)
chr8 (58-132)||(27243341-27243419)
chr8 (58-132)||(27254916-27254994)
chr8 (9-53)||(24512861-24512905)
chr8 (172-208)||(417391-417427)
chr8 (172-208)||(6337831-6337867)
chr8 (172-208)||(12877172-12877208)
chr8 (172-208)||(14029831-14029867)
chr8 (172-208)||(24516807-24516843)
chr8 (172-208)||(36803839-36803875)
chr8 (166-208)||(37404509-37404551)
chr8 (9-37)||(27276805-27276833)
[»] chr7 (11 HSPs)
chr7 (9-153)||(31297886-31298034)
chr7 (9-153)||(24050591-24050739)
chr7 (9-153)||(31297659-31297808)
chr7 (9-153)||(5098234-5098381)
chr7 (9-153)||(39751473-39751621)
chr7 (9-153)||(24059116-24059262)
chr7 (58-153)||(39755226-39755321)
chr7 (9-105)||(5094191-5094291)
chr7 (157-208)||(5098135-5098186)
chr7 (172-208)||(39751656-39751692)
chr7 (9-44)||(39755321-39755356)
[»] chr4 (15 HSPs)
chr4 (9-153)||(50998031-50998179)
chr4 (9-153)||(22158635-22158783)
chr4 (9-153)||(45698296-45698444)
chr4 (9-153)||(23314189-23314337)
chr4 (9-145)||(25920251-25920391)
chr4 (9-153)||(25923056-25923203)
chr4 (9-153)||(23317926-23318069)
chr4 (9-134)||(54397572-54397701)
chr4 (153-208)||(25922952-25923007)
chr4 (9-84)||(51754664-51754743)
chr4 (158-208)||(25920473-25920523)
chr4 (66-138)||(43433575-43433647)
chr4 (9-53)||(51754494-51754538)
chr4 (173-208)||(50997971-50998006)
chr4 (172-208)||(45698469-45698505)
[»] chr3 (11 HSPs)
chr3 (9-153)||(44185276-44185424)
chr3 (7-153)||(37982171-37982320)
chr3 (9-149)||(3808809-3808953)
chr3 (9-139)||(3805263-3805397)
chr3 (9-136)||(37974882-37975014)
chr3 (9-121)||(44174755-44174870)
chr3 (9-121)||(44181455-44181570)
chr3 (9-101)||(44174616-44174711)
chr3 (9-101)||(44181316-44181411)
chr3 (153-208)||(37975045-37975100)
chr3 (157-208)||(7166221-7166273)
[»] chr2 (11 HSPs)
chr2 (9-153)||(40325711-40325860)
chr2 (17-153)||(2381717-2381857)
chr2 (9-153)||(40322026-40322174)
chr2 (9-153)||(36216133-36216281)
chr2 (19-153)||(2387169-2387307)
chr2 (20-153)||(8264581-8264718)
chr2 (153-208)||(36216026-36216081)
chr2 (153-208)||(8264774-8264829)
chr2 (172-208)||(2387105-2387141)
chr2 (172-208)||(40322196-40322232)
chr2 (60-120)||(1577225-1577284)
[»] chr6 (4 HSPs)
chr6 (9-153)||(13845062-13845209)
chr6 (9-53)||(13848902-13848946)
chr6 (157-208)||(13845262-13845313)
chr6 (153-208)||(13848775-13848829)
[»] chr1 (6 HSPs)
chr1 (12-153)||(8026571-8026708)
chr1 (9-149)||(8272183-8272331)
chr1 (9-96)||(25644590-25644681)
chr1 (153-208)||(25650886-25650941)
chr1 (23-129)||(21826237-21826345)
chr1 (172-208)||(8026734-8026770)
[»] scaffold0265 (1 HSPs)
scaffold0265 (23-129)||(6439-6547)


Alignment Details
Target: scaffold0035 (Bit Score: 124; Significance: 6e-64; HSPs: 3)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 80111 - 80259
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  80111 tactccattagaataataacatttattattttattttgcaaaaatttagcaagtattttattatttgcatattcaccccatcttaaattaatgatttttt 80210  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  80211 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 80259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 84178 - 84136
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaa 51  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  84178 tactccattagaataataacatttattattttattttgcaaaa 84136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 84123 - 84079
Alignment:
Q  164 aatccagagaatttaatgccaaagatcatgcattcattccaattt 208  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||    
T  84123 aatccagggaatttaatgccaaagatcatgcattcattcaaattt 84079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 6e-64; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 31174071 - 31173923
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31174071 tactccattagaataataacatttattattttattttgcaaaaatttagcaagtattttattatttgcatattcaccccatcttaaattaatgatttttt 31173972  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31173971 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 31173923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 27261453 - 27261601
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27261453 tactccattagaataataacatttattattttattttgcaaaaatttagcatgtattttattatttgcatattcaccccatcttaaattaatgatttttt 27261552  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27261553 acaatttaaaccatcacaataattaaatttctcctctaatccaatcact 27261601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 28396461 - 28396313
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    || |||||||||||||||||||||||||||||||||||||||| |||||||    
T  28396461 tactccattagaataataacatttattattttattttgcaaaaatttagcaagtattttattatttgcatattcaccccatcttaaattaataatttttt 28396362  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28396361 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 28396313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 31170181 - 31170329
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31170181 tactccattagaataataatatttattattttattttgcaaaaatttagcatgtattttattatttgcatattcaccccatcttaaattaatgatttttt 31170280  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31170281 acaatttaaaccatcacaataattaaatttctcctctaatccaatcact 31170329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 28392367 - 28392513
Alignment:
Q  11 ctccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgattttttac 106  Q
    ||||||||||||||||||||||||||| |||||||||||||||    || ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28392367 ctccattagaataataacatttattattttattttgcaaaaatttagcatgtattttattatttgcatattcatcccatcttaaattaatgattttttac 28392466  T
Q  107 aatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  28392467 aatttaaaccatcacaataattaaatttctcctctaatccaatcact 28392513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 7 - 153
Target Start/End: Complemental strand, 41882281 - 41882131
Alignment:
Q  7 tatactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttt 102  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    || ||||||||||||||||||||||||  ||||||||||||||||||||    
T  41882281 tatactccattagaataataacatttattattttattttgcaaaaatttagcaagtattttattatttgcatattcacttcatcttaaattaatgatttt 41882182  T
Q  103 ttacaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  41882181 ttacgatttaaaccatcacaataattaaatttcacttctaatccaatcact 41882131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 41873353 - 41873502
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcacccc-atcttaaattaatgattttt 103  Q
    ||||||||||||||||||| ||||||||| ||||||| |||||||    || ||||||||||||||||||||||||||| |||||||||||||||| |||    
T  41873353 tactccattagaataataatatttattattttattttacaaaaatttagcatgtattttattatttgcatattcacccccatcttaaattaatgatattt 41873452  T
Q  104 tacaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41873453 tacaatttaaaccatcacaataattaaatttctcctctaatccaatcact 41873502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 27265660 - 27265537
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    || |||||||||||||||||||||||||| |||||||||||||||||||||    
T  27265660 tactccattagaataataacatttattattttattttgcaaaaatttagcaagtattttattatttgcatattcaccc-atcttaaattaatgatttttt 27265562  T
Q  105 acaatttaaaccatcacaataatta 129  Q
    |||||||||||||||||||||||||    
T  27265561 acaatttaaaccatcacaataatta 27265537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 24089423 - 24089513
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaa 95  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||    || ||||||||||||||||||||||||||||| |||||||||    
T  24089423 tactccattagaataatcacatttattattttattttgcaaaaatttagcatgtattttattatttgcatattcaccccattttaaattaa 24089513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 20892996 - 20893073
Alignment:
Q  57 gtattttattatttgcatattcaccccatcttaaattaatgattttttacaatttaaaccatcacaataattaaattt 134  Q
    ||||||||||||||||||||||||||||| ||||||||||||   ||||||||||||||||||| | |||||| ||||    
T  20892996 gtattttattatttgcatattcaccccattttaaattaatgacactttacaatttaaaccatcaaattaattagattt 20893073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 20914547 - 20914470
Alignment:
Q  57 gtattttattatttgcatattcaccccatcttaaattaatgattttttacaatttaaaccatcacaataattaaattt 134  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |||||||||| ||||||||| | |||||| ||||    
T  20914547 gtattttattatttgcatattcaccccattttaaattaatgaccttttacaattcaaaccatcaaattaattagattt 20914470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 27265497 - 27265446
Alignment:
Q  157 aaaccgcaatccagagaatttaatgccaaagatcatgcattcattccaattt 208  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  27265497 aaactgcaatccagagaatttaatgccaaagatcatgcattcgttccaattt 27265446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 24090378 - 24090432
Alignment:
Q  86 cttaaattaatgattttttacaatttaaaccatcacaataattaaatttcacctc 140  Q
    |||||||||||||| ||||||||||||| |||||||| |||||||||||| ||||    
T  24090378 cttaaattaatgatgttttacaatttaacccatcacattaattaaatttcccctc 24090432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 31170356 - 31170392
Alignment:
Q  172 gaatttaatgccaaagatcatgcattcattccaattt 208  Q
    ||||||||||||||||||||||||||||||| |||||    
T  31170356 gaatttaatgccaaagatcatgcattcattcaaattt 31170392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 41873537 - 41873573
Alignment:
Q  172 gaatttaatgccaaagatcatgcattcattccaattt 208  Q
    ||||||||||||||||||||||||||||||| |||||    
T  41873537 gaatttaatgccaaagatcatgcattcattcaaattt 41873573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 20922187 - 20922135
Alignment:
Q  57 gtattttattatttgcatattcacccc-atcttaaattaatgattttttacaa 108  Q
    |||||||||||||| |||||||||||| || ||||||||||||  ||||||||    
T  20922187 gtattttattattttcatattcaccccaattttaaattaatgacattttacaa 20922135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 27261640 - 27261676
Alignment:
Q  172 gaatttaatgccaaagatcatgcattcattccaattt 208  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  27261640 gaatttaataccaaagatcatgcattcattcaaattt 27261676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 1656196 - 1656344
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    |||||||||| |||||||||||||||||| |||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1656196 tactccattaaaataataacatttattattttattttgcaaaaatttagcaagtattttattatttgcatattcaccccatcttaaattaatgatttttt 1656295  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1656296 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 1656344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 6334135 - 6334283
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6334135 tactccattagaataataacatttattattttattttgcaaaaatttagcaagtattttattatttgcatattcaccccatcttaaattaatgatttttt 6334234  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6334235 acaatttaaaccatcacaataattaaatttcacctctaattcaatcact 6334283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 14033568 - 14033420
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    || ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14033568 tactccattagaataataacatttattattttattttgcaaaaatttagcaagtattttattatttgcatattcaccccatcttaaattgatgatttttt 14033469  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14033468 acaatttaaaccatcacaataattaaatttcatctctaatccaatcact 14033420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 36797752 - 36797896
Alignment:
Q  13 ccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgattttttacaa 108  Q
    ||||||||||||||||||||||||| |||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36797752 ccattagaataataacatttattattttattttgcaaaaatttagcaagtattttattatttgcatattcaccccatcttaaattaatgattttttacaa 36797851  T
Q  109 tttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  36797852 tttaaaccattacaataattaaatttcacctctaatccaatcact 36797896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 417599 - 417450
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatatt-caccccatcttaaattaatgattttt 103  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    || ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  417599 tactccattagaataataacatttattattttattttgcaaaaatttagcatgtattttattatttgcatatttcaccccatcttaaattaatgattttt 417500  T
Q  104 tacaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  417499 tacaatttaaaccatcacaataattaaatttctcctctaatccaatcact 417450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 6338039 - 6337891
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||| ||||||||| |||||||||| ||||    || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6338039 tactccattagaataataatatttattattttattttgcacaaatttagcatgtattttattatttgcatattcaccccatcttaaattaatgatttttt 6337940  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6337939 acaatttaaaccatcacaataattaaatttctcctctaatccaatcact 6337891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 24517013 - 24516865
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24517013 tactccattagaataataatatttattattttattttgcaaaaatttagcatgtattttattatttgcatattcaccccatcttaaattaatgatttttt 24516914  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||    
T  24516913 acaatttaaaccatcacaataattaaatttatcctctaatccaatcact 24516865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 36804049 - 36803901
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36804049 tactccattagaataataatatttattattttattttgcaaaaatttagcatgtattttattatttgcatattcaccccatcttaaattaatgatttttt 36803950  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||    
T  36803949 acaatttaaaccatcacaataactaaatttctcctctaatccaatcact 36803901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 14029654 - 14029801
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||    || |||||||||||||||||||||||||||||||||||||||||||||| |    
T  14029654 tactccattagaataataatatttattattttattttgcaaaaatttagcatgtattttattatttgcatattcaccccatcttaaattaatgatttt-t 14029752  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14029753 acaatttaaaccatcacaataattaaatttctcctctaatccaatcact 14029801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 23712631 - 23712778
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||    || |||||||||||||||||||||||||||||||||||||||||||||| |    
T  23712631 tactccattagaataataatatttattattttattttgcaaaaatttagcatgtattttattatttgcatattcaccccatcttaaattaatgatttt-t 23712729  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23712730 acaatttaaaccatcacaataattaaatttctcctctaatccaatcact 23712778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 7 - 153
Target Start/End: Original strand, 12876996 - 12877146
Alignment:
Q  7 tatactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttt 102  Q
    ||||||||||||||||||||| ||||||||| |||||||| ||||||    || |||||||||||||||||||||||||||||||||||||||||||| |    
T  12876996 tatactccattagaataataatatttattattttattttgtaaaaatttagcatgtattttattatttgcatattcaccccatcttaaattaatgattat 12877095  T
Q  103 ttacaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  12877096 ttacaatttaaaccatcataataattaaatttctcctctaatccaatcact 12877146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 1660044 - 1659902
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    || |||||||||||||||||||||||||| |||||||| ||||||||||||    
T  1660044 tactccattagaataataacatttattattttattttgcaaaaatttagcatgtattttattatttgcatattcaccc-atcttaaactaatgatttttt 1659946  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaa 148  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  1659945 acaatttaaaccatcacaataattaaatttctcctctaatccaa 1659902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 413457 - 413597
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    |||| |||||||||||||||||||||||| |||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  413457 tacttcattagaataataacatttattattttattttgcaaaaatttagcaagtattttattatttgcatattcaccccatcttaaattaatgatttttt 413556  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaa 148  Q
    |||||||||   |||||||||||||||||| |||||||||||||    
T  413557 acaatttaa---atcacaataattaaattttacctctaatccaa 413597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 12880713 - 12880581
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    || ||||||||||||||||||||||||| |||||||||||||| |||||||    
T  12880713 tactccattagaataataacatttattattttattttgcaaaaatttagcaagtattttattatttgcatattcacctcatcttaaattaataatttttt 12880614  T
Q  105 acaatttaaaccatcacaataattaaatttcac 137  Q
    |||||||||||||||| ||||||||||||||||    
T  12880613 acaatttaaaccatcataataattaaatttcac 12880581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 37404666 - 37404553
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||||||||||||| | ||||||||||||     || ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37404666 tactccattagaataataacatttattatttaattttgcaaaaaattaacaagtattttattatttgcatattcaccccgtcttaaattaatgatttttt 37404567  T
Q  105 acaatttaaaccat 118  Q
    ||||||||||||||    
T  37404566 acaatttaaaccat 37404553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 61 - 153
Target Start/End: Complemental strand, 27276812 - 27276718
Alignment:
Q  61 tttattatttgcatattcaccccatc----ttaaattaatgattttttacaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    ||||||||||||||||||||||||||    ||||||||||||| |||||||||||||||||||||| ||||| |||||| |||| ||||||||||||    
T  27276812 tttattatttgcatattcaccccatccatcttaaattaatgatgttttacaatttaaaccatcacattaatt-aatttc-cctccaatccaatcact 27276718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 24512923 - 24512968
Alignment:
Q  108 atttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  24512923 atttaaaccatcacaataattaaatttcacctctaatccaatcact 24512968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 27243341 - 27243419
Alignment:
Q  58 tattttattatttgcatattcaccccat----cttaaattaatgattttttacaatttaaaccatcacaataattaaat 132  Q
    ||||||| |||||||||||||| |||||    ||||||||||| || |||||||||||||||||||||| |||||||||    
T  27243341 tattttactatttgcatattcaacccatacatcttaaattaataatattttacaatttaaaccatcacattaattaaat 27243419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 27254916 - 27254994
Alignment:
Q  58 tattttattatttgcatattcaccccat----cttaaattaatgattttttacaatttaaaccatcacaataattaaat 132  Q
    ||||||| |||||||||||||| |||||    ||||||||||| || |||||||||||||||||||||| |||||||||    
T  27254916 tattttactatttgcatattcaacccatacatcttaaattaataatattttacaatttaaaccatcacattaattaaat 27254994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 24512861 - 24512905
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat 53  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  24512861 tactccattagaataataacatttattattttattttgcaaaaat 24512905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 417427 - 417391
Alignment:
Q  172 gaatttaatgccaaagatcatgcattcattccaattt 208  Q
    ||||||||||||||||||||||||||||||| |||||    
T  417427 gaatttaatgccaaagatcatgcattcattcaaattt 417391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 6337867 - 6337831
Alignment:
Q  172 gaatttaatgccaaagatcatgcattcattccaattt 208  Q
    ||||||||||||||||||||||||||||||| |||||    
T  6337867 gaatttaatgccaaagatcatgcattcattcaaattt 6337831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 12877172 - 12877208
Alignment:
Q  172 gaatttaatgccaaagatcatgcattcattccaattt 208  Q
    ||||||||||||||||||||||||||||||| |||||    
T  12877172 gaatttaatgccaaagatcatgcattcattcaaattt 12877208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 14029831 - 14029867
Alignment:
Q  172 gaatttaatgccaaagatcatgcattcattccaattt 208  Q
    ||||||||||||||||||||||||||||||| |||||    
T  14029831 gaatttaatgccaaagatcatgcattcattcaaattt 14029867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 24516843 - 24516807
Alignment:
Q  172 gaatttaatgccaaagatcatgcattcattccaattt 208  Q
    ||||||||||||||||||||||||||||||| |||||    
T  24516843 gaatttaatgccaaagatcatgcattcattcaaattt 24516807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 36803875 - 36803839
Alignment:
Q  172 gaatttaatgccaaagatcatgcattcattccaattt 208  Q
    ||||||||||||||||||||||||||||||| |||||    
T  36803875 gaatttaatgccaaagatcatgcattcattcaaattt 36803839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 37404551 - 37404509
Alignment:
Q  166 tccagagaatttaatgccaaagatcatgcattcattccaattt 208  Q
    ||||| ||||||||||| ||||||||||||||| |||||||||    
T  37404551 tccagggaatttaatgctaaagatcatgcattcgttccaattt 37404509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 37
Target Start/End: Complemental strand, 27276833 - 27276805
Alignment:
Q  9 tactccattagaataataacatttattat 37  Q
    |||||||||||||||||||||||||||||    
T  27276833 tactccattagaataataacatttattat 27276805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 31298034 - 31297886
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31298034 tactccattagaataataacatttattattttattttgcaaaaatttagcaagtattttattatttgcatattcaccccatcttaaattaatgatttttt 31297935  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31297934 acaatttaaaccatcacaataattaaatttcacctctaatccaaacact 31297886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 24050591 - 24050739
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24050591 tactccattagaataataacaattattattttattttgcaaaaatttagcatgtattttattatttgcatattcaccccatcttaaattaatgatttttt 24050690  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24050691 acaatttaaaccatcacaataattaaatttctcctctaatccaatcact 24050739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 31297659 - 31297808
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttt-t 103  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    || |||||||||||||||||||||||||||||||||||||||||||||| |    
T  31297659 tactccattagaataataacatttattattttattttgcaaaaatttagcatgtattttattatttgcatattcaccccatcttaaattaatgatttttt 31297758  T
Q  104 tacaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31297759 tacaatttaaaccatcacaataattaaatttctcctctaatccaatcact 31297808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 5098381 - 5098234
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    || |||||||||||||||||||||||||| |||||||||||||||||||||    
T  5098381 tactccattagaataataacatttattattttattttgcaaaaatttaacaagtattttattatttgcatattcaccc-atcttaaattaatgatttttt 5098283  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5098282 acattttaaaccatcacaataattaaatttcacctctaatccaatcact 5098234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 39751473 - 39751621
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    |||||||||| |||||||| ||||||||| |||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39751473 tactccattaaaataataatatttattattttattttgcaaaaatttagcatgtattttattatttgcatattcaccccatcttaaattaatgatttttt 39751572  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39751573 acaatttaaaccatcacaataattaaatttctcctctaatccaatcact 39751621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 24059262 - 24059116
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatt--tt 102  Q
    |||||||||||||||||||||||    || |||||||||| ||||    || ||||||||||||||||||||||||||||||||||||||||||||  ||    
T  24059262 tactccattagaataataacatt----attttattttgcagaaatttagcaagtattttattatttgcatattcaccccatcttaaattaatgatttttt 24059167  T
Q  103 ttacaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  24059166 ttacaatttaagccatcacaataattaaatttcacctctaatcaaatcact 24059116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 58 - 153
Target Start/End: Complemental strand, 39755321 - 39755226
Alignment:
Q  58 tattttattatttgcatattcaccccatcttaaattaatgattttttacaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    |||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39755321 tattttattatttgcatattcacctcattttaaatgaatgattttttacaatttaaaccatcacaataattaaatttcacctctaatccaatcact 39755226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 5094191 - 5094291
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5094191 tactccattagaataataacatttattattttattttgcaaaaatttagcatgtattttattatttgcatattcaccccatcttaaattaatgatttttt 5094290  T
Q  105 a 105  Q
    |    
T  5094291 a 5094291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 5098186 - 5098135
Alignment:
Q  157 aaaccgcaatccagagaatttaatgccaaagatcatgcattcattccaattt 208  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  5098186 aaaccgcaatccagggaatttaatgccaaagatcatgcattcgttccaattt 5098135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 39751656 - 39751692
Alignment:
Q  172 gaatttaatgccaaagatcatgcattcattccaattt 208  Q
    ||||||||||||||||||||||||||||||| |||||    
T  39751656 gaatttaatgccaaagatcatgcattcattcaaattt 39751692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 39755356 - 39755321
Alignment:
Q  9 tactccattagaataataacatttattatcttattt 44  Q
    ||||||||||||||||||||||||||||| ||||||    
T  39755356 tactccattagaataataacatttattattttattt 39755321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 50998179 - 50998031
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50998179 tactccattagaataataacatttattattttattttgcaaaaatttagcatgtattttattatttgcatattcaccccatcttaaattaatgatttttt 50998080  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  50998079 acaatttaaaccatcacaataattaaatttctcctctaatccaatcact 50998031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 22158635 - 22158783
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    || |||||||||||||||||||||||||| |||||||||||||||||||||    
T  22158635 tactccattagaataataacatttattattttattttgcaaaaatttagcaagtattttattatttgcatattcaccctatcttaaattaatgatttttt 22158734  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22158735 acaatttaaaccatcacaataattaaatttcacctctaattcaatcact 22158783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 45698296 - 45698444
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45698296 tactccattagaataataatatttattattttattttgcaaaaatttagcatgtattttattatttgcatattcaccccatcttaaattaatgatttttt 45698395  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  45698396 acaatttaaaccatcacaataattaaatttctcctctaatccaatcact 45698444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 23314189 - 23314337
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||| ||||||||||||| ||||||||| |||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23314189 tactctattagaataataatatttattattttattttgcaaaaatttagcaagtattttattatttgcatattcaccccatcttaaattaatgatttttt 23314288  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23314289 acaatttaaaccatcacactaattaaatttcacctctaatccaatcact 23314337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 25920251 - 25920391
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    || |||||||||||||||||||||||||||||||||||||||| |||||||    
T  25920251 tactccattagaataataacatttattattttattttgcaaaaatttagcaagtattttattatttgcatattcaccccatcttaaattaataatttttt 25920350  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatc 145  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25920351 acaatttaaaccatcacaataattaaatttcacctctaatc 25920391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 25923203 - 25923056
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||    || |||||||||||||||||||||||||| |||||||||||||||||||||    
T  25923203 tactccattagaataataatatttattattttattttgcaaaaatttagcatgtattttattatttgcatattcaccc-atcttaaattaatgatttttt 25923105  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    | ||||||||||||||||||||||||||||| |||||||||||||||||    
T  25923104 ataatttaaaccatcacaataattaaatttctcctctaatccaatcact 25923056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 23318069 - 23317926
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||    || ||||||||||||||||||||||||||||||||||     |||||||||    
T  23318069 tactccattagaataataatatttattattttattttgcaaaaatttagcatgtattttattatttgcatattcaccccatcttaa-----tgatttttt 23317975  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23317974 acaatttaaaccatcacaataattaaatttctcctctaatccaatcact 23317926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 54397572 - 54397701
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    |||| |||||||||||||| ||||||||| |||||||||||||||    ||  || ||||||||||||||||| || |||||||||||||||||||||||    
T  54397572 tacttcattagaataataatatttattattttattttgcaaaaatttagcaaataatttattatttgcatatttactccatcttaaattaatgatttttt 54397671  T
Q  105 acaatttaaaccatcacaataattaaattt 134  Q
    ||||||||||| ||||||||||||||||||    
T  54397672 acaatttaaactatcacaataattaaattt 54397701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 25923007 - 25922952
Alignment:
Q  153 tatcaaaccgcaatccagagaatttaatgccaaagatcatgcattcattccaattt 208  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  25923007 tatcaaacagcaatccagagaatttaatgccaaagatcatgcattcattccaattt 25922952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 51754743 - 51754664
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcacccca 84  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||    || ||||||||||||||||||||||||||||    
T  51754743 tactccattagaataataatatttattattttattttgcaaaaatttagcatgtattttattatttgcatattcacccca 51754664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 25920473 - 25920523
Alignment:
Q  158 aaccgcaatccagagaatttaatgccaaagatcatgcattcattccaattt 208  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  25920473 aaccgcaatccagggaatttaatgccaaagatcatgcattcgttccaattt 25920523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 43433647 - 43433575
Alignment:
Q  66 tatttgcatattcaccccatcttaaattaatgattttttacaatttaaaccatcacaataattaaatttcacc 138  Q
    |||||||||||||||||||| ||||||||||||  |||||||||||| ||||||| | |||||  ||||||||    
T  43433647 tatttgcatattcaccccattttaaattaatgacattttacaatttacaccatcaaattaatttgatttcacc 43433575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 51754494 - 51754538
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat 53  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  51754494 tactccattagaataataacatttattattttattttgcaaaaat 51754538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 208
Target Start/End: Complemental strand, 50998006 - 50997971
Alignment:
Q  173 aatttaatgccaaagatcatgcattcattccaattt 208  Q
    |||||||||||||||||||||||||||||| |||||    
T  50998006 aatttaatgccaaagatcatgcattcattcaaattt 50997971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 45698469 - 45698505
Alignment:
Q  172 gaatttaatgccaaagatcatgcattcattccaattt 208  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  45698469 gaatttaatgccaaagaccatgcattcattcaaattt 45698505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 44185424 - 44185276
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  44185424 tactccattagaataataacatttattattttattttgcaaaaatttagcaaatattttattatttgcatattcaccccatcttaaattaatgatttttt 44185325  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44185324 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 44185276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 7 - 153
Target Start/End: Complemental strand, 37982320 - 37982171
Alignment:
Q  7 tatactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttt 102  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    || |||||||||||||||||||||||||| |||||||||||||||||||    
T  37982320 tatactccattagaataataacatttattattttattttgcaaaaatttagcatgtattttattatttgcatattcaccc-atcttaaattaatgatttt 37982222  T
Q  103 ttacaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37982221 ttacaatttaaaccatcacaataattaaatttctcctctaatccaatcact 37982171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 3808953 - 3808809
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    || |||||||||||||||||||||| |||||||||||||||||||||||||    
T  3808953 tactccattagaataataacatttattattttattttgcaaaaatttaacatgtattttattatttgcatattcgccccatcttaaattaatgatttttt 3808854  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaat 149  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  3808853 acaatttaaaccatcacaataattaaatttctcctctaatccaat 3808809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 3805263 - 3805397
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||||||||||||| | |||||||||||||    || ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3805263 tactccattagaataataacatttattatttaattttgcaaaaatttagcaagtattttattatttgcatattcaccccgtcttaaattaatgatttttt 3805362  T
Q  105 acaatttaaaccatcacaataattaaatttcacct 139  Q
    |||||||||||||||||||||||||||||||||||    
T  3805363 acaatttaaaccatcacaataattaaatttcacct 3805397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 37974882 - 37975014
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatga-ttttt 103  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    || |||||||||||||||||||||||||||||||||||||||||| |||||    
T  37974882 tactccattagaataataacatttattattttattttgcaaaaatttagcaagtattttattatttgcatattcaccccatcttaaattaatgatttttt 37974981  T
Q  104 tacaatttaaaccatcacaataattaaatttca 136  Q
    |||||||||||||||||||||||||||||||||    
T  37974982 tacaatttaaaccatcacaataattaaatttca 37975014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 44174755 - 44174870
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    ||  |||||||||||||||||||||||||||||||||| ||||||||||||    
T  44174755 tactccattagaataataacatttattattttattttgcaaaaatttagcaaatattttattatttgcatattcaccccatcttaaa-taatgatttttt 44174853  T
Q  105 acaatttaaaccatcac 121  Q
    |||||||||||||||||    
T  44174854 acaatttaaaccatcac 44174870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 44181455 - 44181570
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    ||  |||||||||||||||||||||||||||||||||| ||||||||||||    
T  44181455 tactccattagaataataacatttattattttattttgcaaaaatttagcaaatattttattatttgcatattcaccccatcttaaa-taatgatttttt 44181553  T
Q  105 acaatttaaaccatcac 121  Q
    |||||||||||||||||    
T  44181554 acaatttaaaccatcac 44181570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 44174616 - 44174711
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat---cacgtattttattatttgcatattcaccccatcttaaattaatgattt 101  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| |   || |||||||||||||||||||||||||||||||||||||||||||||    
T  44174616 tactccattagaataataatatttattattttattttgcaaaatttagcatgtattttattatttgcatattcaccccatcttaaattaatgattt 44174711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 44181316 - 44181411
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat---cacgtattttattatttgcatattcaccccatcttaaattaatgattt 101  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| |   || |||||||||||||||||||||||||||||||||||||||||||||    
T  44181316 tactccattagaataataatatttattattttattttgcaaaatttagcatgtattttattatttgcatattcaccccatcttaaattaatgattt 44181411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 37975045 - 37975100
Alignment:
Q  153 tatcaaaccgcaatccagagaatttaatgccaaagatcatgcattcattccaattt 208  Q
    ||| |||||||||||||| |||||||||| |||||||||||||||| |||||||||    
T  37975045 tatgaaaccgcaatccagggaatttaatgtcaaagatcatgcattcgttccaattt 37975100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 7166273 - 7166221
Alignment:
Q  157 aaaccgcaatcc-agagaatttaatgccaaagatcatgcattcattccaattt 208  Q
    |||||||||||| | |||||||| |||||| ||||||||||||||||||||||    
T  7166273 aaaccgcaatcctaaagaatttattgccaatgatcatgcattcattccaattt 7166221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 9e-60; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 40325860 - 40325711
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40325860 tactccattagaataataacatttattattttattttgcaaaaatttagcaagtattttattatttgcatattcaccccatcttaaattaatgatttttt 40325761  T
Q  105 -acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40325760 tacaatttaaaccatcacaataattaaatttcacctctaatccaatcact 40325711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 2381717 - 2381857
Alignment:
Q  17 tagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgattttttacaattta 112  Q
    ||||||||||||||||||||| |||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2381717 tagaataataacatttattattttattttgcaaaaatttagcaagtattttattatttgcatattcaccccatcttaaattaatgattttttacaattta 2381816  T
Q  113 aaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2381817 aaccatcacaataattaaatttcacctctaatccaatcact 2381857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 40322026 - 40322174
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40322026 tactccattagaataataatatttattattttattttgcaaaaatttagcatgtattttattatttgcatattcaccccatcttaaattaatgatttttt 40322125  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40322126 acaatttaaaccatcacaataattaaatttctcctctaatccaatcact 40322174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 36216281 - 36216133
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    ||||| ||||||||||||| ||||||||| |||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36216281 tactctattagaataataatatttattattttattttgcaaaaatttagcatgtattttattatttgcatattcaccccatcttaaattaatgatttttt 36216182  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36216181 acaatttaaaccatcacaataattaaatttctcctctaatccaatcact 36216133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 2387307 - 2387169
Alignment:
Q  19 gaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgattttttacaatttaaa 114  Q
    ||||||||| ||||||||| |||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2387307 gaataataatatttattattttattttgcaaaaatttagcatgtattttattatttgcatattcaccccatcttaaattaatgattttttacaatttaaa 2387208  T
Q  115 ccatcacaataattaaatttcacctctaatccaatcact 153  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  2387207 ccatcacaataattaaatttctcctctaatccaatcact 2387169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 8264581 - 8264718
Alignment:
Q  20 aataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgattttttacaatttaaac 115  Q
    |||||||||||||||||| |||||||||||||||    || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8264581 aataataacatttattattttattttgcaaaaatttagcatgtattttattatttacatattcaccccatcttaaattaatgattttttacaatttaaac 8264680  T
Q  116 catcacaataattaaatttcacctctaatccaatcact 153  Q
    |||||||||||||||||||| |||||||||||||||||    
T  8264681 catcacaataattaaatttcccctctaatccaatcact 8264718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 36216081 - 36216026
Alignment:
Q  153 tatcaaaccgcaatccagagaatttaatgccaaagatcatgcattcattccaattt 208  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36216081 tatcaaaccgcaatccagggaatttaatgccaaagatcatgcattcattccaattt 36216026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 8264774 - 8264829
Alignment:
Q  153 tatcaaaccgcaatccagagaatttaatgccaaagatcatgcattcattccaattt 208  Q
    |||||||||||||||||| |||||||||| | ||||||||||||||||||||||||    
T  8264774 tatcaaaccgcaatccagggaatttaatgtcgaagatcatgcattcattccaattt 8264829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 2387141 - 2387105
Alignment:
Q  172 gaatttaatgccaaagatcatgcattcattccaattt 208  Q
    ||||||||||||||||||||||||||||||| |||||    
T  2387141 gaatttaatgccaaagatcatgcattcattcaaattt 2387105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 40322196 - 40322232
Alignment:
Q  172 gaatttaatgccaaagatcatgcattcattccaattt 208  Q
    ||||||||||||||||||||||||||||||| |||||    
T  40322196 gaatttaatgccaaagatcatgcattcattcaaattt 40322232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 1577284 - 1577225
Alignment:
Q  60 ttttattatttgcatattcaccccatcttaaattaatgattttttacaatttaaaccatca 120  Q
    |||||||||||| ||||||| |||| |||||||||||||  ||||||| |||||| |||||    
T  1577284 ttttattatttgtatattcatccca-cttaaattaatgacattttacattttaaatcatca 1577225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 13845062 - 13845209
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaatgatttttt 104  Q
    |||||||||| |||||||||||||||||| |||||||||||||||    || |||||||||||||||||||||| |||||||||||||||||||||||||    
T  13845062 tactccattaaaataataacatttattattttattttgcaaaaatatagcaagtattttattatttgcatattcgccccatcttaaattaatgatttttt 13845161  T
Q  105 acaatttaaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13845162 acaatttaaacc-tcacaataattaaatttcacctctaatccaatcact 13845209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 13848946 - 13848902
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat 53  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  13848946 tactccattagaataataacatttattattttattttgcaaaaat 13848902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 13845262 - 13845313
Alignment:
Q  157 aaaccgcaatccagagaatttaatgccaaagatcatgcattcattccaattt 208  Q
    |||||||||| ||| |||||||||| |||||||||||||||| |||||||||    
T  13845262 aaaccgcaattcagggaatttaatgtcaaagatcatgcattcgttccaattt 13845313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 13848829 - 13848775
Alignment:
Q  153 tatcaaaccgcaatccagagaatttaatgccaaagatcatgcattcattccaattt 208  Q
    ||||||||| |||||||||||||||||||  ||| |||||||||||||| ||||||    
T  13848829 tatcaaaccacaatccagagaatttaatgtgaaa-atcatgcattcatttcaattt 13848775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 8026571 - 8026708
Alignment:
Q  12 tccattagaataataacatttattatcttattttgcaaaaatcacgtattttattatttgcatattcaccccatcttaaattaatgattttttacaattt 111  Q
    |||||||||||||||| ||||||||| |||||||||||||||   | || |    |||||||||||||||||||||||||||||||||| ||||||||||    
T  8026571 tccattagaataataatatttattattttattttgcaaaaatttagcatgt----atttgcatattcaccccatcttaaattaatgattatttacaattt 8026666  T
Q  112 aaaccatcacaataattaaatttcacctctaatccaatcact 153  Q
    ||||||||  |||||||||||||| |||||||||||||||||    
T  8026667 aaaccatcgtaataattaaatttctcctctaatccaatcact 8026708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 8272183 - 8272331
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattat----ttgcatattcaccccatcttaaattaatgatt 100  Q
    ||||||||||||||||| | |||||||||||||||||||||||||    || |||||| |||||    ||||||||| ||||||| |||||||||||||     
T  8272183 tactccattagaataatcatatttattatcttattttgcaaaaatttaacatgtatttcattatatatttgcatatttaccccattttaaattaatgatg 8272282  T
Q  101 ttttacaatttaaaccatcacaataattaaatttcacctctaatccaat 149  Q
    |||||||||||||||||||||| || ||||||||| |||||||||||||    
T  8272283 ttttacaatttaaaccatcacattatttaaatttctcctctaatccaat 8272331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 25644590 - 25644681
Alignment:
Q  9 tactccattagaataataacatttattatcttattttgcaaaaat----cacgtattttattatttgcatattcaccccatcttaaattaat 96  Q
    |||| |||||||||||||||||||||||| |||||||||||||||    || |||||||||||||||||||||| |||||||||||||||||    
T  25644590 tacttcattagaataataacatttattattttattttgcaaaaatttagcaagtattttattatttgcatattccccccatcttaaattaat 25644681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 25650941 - 25650886
Alignment:
Q  153 tatcaaaccgcaatccagagaatttaatgccaaagatcatgcattcattccaattt 208  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25650941 tatcaaaccgcaatccagggaatttaatgccaaagatcatgcattcattccaattt 25650886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 21826345 - 21826237
Alignment:
Q  23 aataacatttattatcttattttgcaaaaat--cacgtattttattatttgcatattcaccccatcttaaattaatgattttttacaatttaaaccatca 120  Q
    ||||| ||||||||| ||||||| ||| | |  || ||||||||||||||||||||||||||||| |||||||||||   |||||||||||||| |||||    
T  21826345 aataaaatttattattttattttacaatattagcatgtattttattatttgcatattcaccccattttaaattaatgtcattttacaatttaaatcatca 21826246  T
Q  121 caataatta 129  Q
     | ||||||    
T  21826245 aattaatta 21826237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 8026734 - 8026770
Alignment:
Q  172 gaatttaatgccaaagatcatgcattcattccaattt 208  Q
    ||||||||||||||||||||||||||||||| |||||    
T  8026734 gaatttaatgccaaagatcatgcattcattcaaattt 8026770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 6439 - 6547
Alignment:
Q  23 aataacatttattatcttattttgcaaaaat--cacgtattttattatttgcatattcaccccatcttaaattaatgattttttacaatttaaaccatca 120  Q
    ||||| ||||||||| ||||||| ||| | |  || ||||||||||||||||||||||||||||| |||||||||||   |||||||||||||| |||||    
T  6439 aataaaatttattattttattttacaatattagcatgtattttattatttgcatattcaccccattttaaattaatgtcattttacaatttaaatcatca 6538  T
Q  121 caataatta 129  Q
     | ||||||    
T  6539 aattaatta 6547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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