View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3134_low_2 (Length: 601)
Name: NF3134_low_2
Description: NF3134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3134_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 54 - 587
Target Start/End: Original strand, 54897899 - 54898425
Alignment:
| Q |
54 |
gaaaaagctttatggtgcgacaaaactaatgacgagaaacaacgaattaataagtgctgtaggatccttcatgagattgcaaattattttagttttcatg |
153 |
Q |
| |
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||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
54897899 |
gaaaaagttttatggtgcaacaaaactaatgacgaggaacaacgaattaataagtgccgtaggatccttcatgagattgcaaattattttagcttttatg |
54897998 |
T |
|
| Q |
154 |
tattttgaaattataacaccactaccccatgattcgtgtgcctgtcgtgctattgtttctcgcactacgtggcaatgctcnnnnnnnattatacgttcat |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
54897999 |
tattttgaaattataacaccactaccccatgattcgtgt------cgtgctattgtttctcgcactacgtagcaatgctatttttttattatacgttcat |
54898092 |
T |
|
| Q |
254 |
ctaatatcatacagaacaagaagaccttagctgtattttggtatagagtaaatgattcttatttctaaaatttcttatttcataattgttgttggtcaaa |
353 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
54898093 |
ctaatatcatac-gaacaagaagaccttagctgtattttgatatagagtaaatgattcttatttctaaaatttcttatttcataattgttgttggtcgaa |
54898191 |
T |
|
| Q |
354 |
cgacacttaactgtcgttgtcatttgtctctccaacaataattaagtgtcatttgccannnnnnnnatcatatgaatcactttttaaacccatttaaaaa |
453 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
54898192 |
cgacacttaactgtcattgtcatttgtctctccaacaataattaagtgtcatttgctattttttagatcatatgaatcactttttaaacccatttaaaaa |
54898291 |
T |
|
| Q |
454 |
tatcttggaagtcagctaagttaattgttgttaggggtaaataggtaattttaagatggattgaagaatttttgaaagcctaaagattaatacacggttg |
553 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54898292 |
tatcttgaaagtcagctaagttaattgttgttaggggtaaataggtaattttgagatggattgaagaatttttgaaagcctaaagattaatacacggttg |
54898391 |
T |
|
| Q |
554 |
gcaatgatccggtggtatggcgtgatgcttgatg |
587 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |
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| T |
54898392 |
gcaatgatccggtggtatagcgtgatgcttgatg |
54898425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 51 - 233
Target Start/End: Complemental strand, 42044837 - 42044655
Alignment:
| Q |
51 |
atggaaaaagctttatggtgcgacaaaactaatgacgagaaacaacgaattaataagtgctgtaggatccttcatgagattgcaaattattttagttttc |
150 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42044837 |
atggaaaaagctttatggtgcgacaaaactaatgacgagaaacaacgaattaataagtgctgtaggatccttcatgagattgcaaattattttaactttc |
42044738 |
T |
|
| Q |
151 |
atgtattttgaaattataacaccactaccccatgattcgtgtgcctgtcgtgctattgtttctcgcactacgtggcaatgctc |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
42044737 |
atgtattttgaaattataacaccactaccccatgattcgtgtgcctgtcgtgctattgtttctcgcactacctagcaatgctc |
42044655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 52 - 233
Target Start/End: Complemental strand, 43205019 - 43204838
Alignment:
| Q |
52 |
tggaaaaagctttatggtgcgacaaaactaatgacgagaaacaacgaattaataagtgctgtaggatccttcatgagattgcaaattattttagttttca |
151 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||| |
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| T |
43205019 |
tggaaaaagctttatggtacgacaaaactaataacgagaaacaacgaattaataagtgccgtaggatccttcatgaaattgcaaattattttagctttca |
43204920 |
T |
|
| Q |
152 |
tgtattttgaaattataacaccactaccccatgattcgtgtgcctgtcgtgctattgtttctcgcactacgtggcaatgctc |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
43204919 |
tgtattttgaaattataacaccactaccccatgattcgtgtgcctgtcgtgctattgtttctcgcactatgtagcaatgctc |
43204838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 51 - 233
Target Start/End: Complemental strand, 33654261 - 33654079
Alignment:
| Q |
51 |
atggaaaaagctttatggtgcgacaaaactaatgacgagaaacaacgaattaataagtgctgtaggatccttcatgagattgcaaattattttagttttc |
150 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
33654261 |
atggaaaaagctttatggtgcaacaaaactaatgacgagaaacaacgaattaataagtgtcataggatccttcatgagattgcaaattattttagctttc |
33654162 |
T |
|
| Q |
151 |
atgtattttgaaattataacaccactaccccatgattcgtgtgcctgtcgtgctattgtttctcgcactacgtggcaatgctc |
233 |
Q |
| |
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|| ||||||||||||||||||||| |||||||| ||| ||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
33654161 |
atatattttgaaattataacaccattaccccataatttatgtgcatgtcgtgctattgtttctcgcactacgtagcaatgctc |
33654079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 9e-84; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 52 - 233
Target Start/End: Original strand, 16908029 - 16908210
Alignment:
| Q |
52 |
tggaaaaagctttatggtgcgacaaaactaatgacgagaaacaacgaattaataagtgctgtaggatccttcatgagattgcaaattattttagttttca |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||| |
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| T |
16908029 |
tggaaaaagctttatggtgcgacaaaactaatgacgagaaacaacgaattaataagtgccgtaggatccttcataagattgcaaattattttagctttca |
16908128 |
T |
|
| Q |
152 |
tgtattttgaaattataacaccactaccccatgattcgtgtgcctgtcgtgctattgtttctcgcactacgtggcaatgctc |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
16908129 |
tgtattttgaaattataacaccactaccccatgattcgtgtgcctgtcgtgctattgtttctcgcactagctagcaatgctc |
16908210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 51 - 233
Target Start/End: Complemental strand, 5002347 - 5002164
Alignment:
| Q |
51 |
atggaaaaagctttatggtgcgacaaaactaatgacgagaaacaacgaattaataagtgctgtaggatccttcatgagattgcaaattattttagttttc |
150 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||||||||| | ||||||| ||||| |||||| || ||||||| |||| |
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| T |
5002347 |
atggaaaaagcttgatggtgcgacaaaactgccaacgagaaacaacgaattaatagacaccataggatctttcattagattgtaatttattttgactttc |
5002248 |
T |
|
| Q |
151 |
atgtattttgaaattataacaccactaccc-catgattcgtgtgcctgtcgtgctattgtttctcgcactacgtggcaatgctc |
233 |
Q |
| |
|
||||||| ||||| ||||| | ||||||| ||||||||||| ||| ||||||||||| |||||||||| | ||||||| |||| |
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|
| T |
5002247 |
atgtattctgaaaatataatatcactaccagcatgattcgtgcgccagtcgtgctattatttctcgcaccatgtggcaaagctc |
5002164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 233
Target Start/End: Original strand, 23472185 - 23472364
Alignment:
| Q |
53 |
ggaaaaagctttatggtgcgacaaaactaatgacgagaaacaacgaattaataagtgctgtaggatccttcatgagattgcaaattattttagttttcat |
152 |
Q |
| |
|
||||||||||| || |||||||||| ||| |||| ||||||||||| |||| || | || |||| ||||| |||||||| ||||||| ||| || |
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|
| T |
23472185 |
ggaaaaagcttgatagtgcgacaaa-ctacccacgaaaaacaacgaataaataggtaccgttggatatttcattagattgcagtttattttgacttttat |
23472283 |
T |
|
| Q |
153 |
gtattttgaaattataacaccactaccccatgattcgtgtgcctgtcgtgctattgtttctcgcactacgtggcaatgctc |
233 |
Q |
| |
|
|| |||||||| |||| |||||| |||||||||| ||||||| |||| || || |||||||||| | || ||||||||| |
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|
| T |
23472284 |
gttttttgaaaaaataataccactgccccatgatttgtgtgccagtcgcactgttatttctcgcaccaagtagcaatgctc |
23472364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 233
Target Start/End: Original strand, 41552988 - 41553100
Alignment:
| Q |
121 |
ttcatgagattgcaaattattttagttttcatgtattttgaaattataacaccactaccccatgattcgtgtgcctgtcgtgctattgtttctcgcacta |
220 |
Q |
| |
|
||||| |||||||| ||||||| ||| ||||||||||||| |||| |||||| |||||||||||||||||| |||| | || |||||||||| | |
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|
| T |
41552988 |
ttcattagattgcagtttattttgacttttatgtattttgaaaaaataataccactgccccatgattcgtgtgccagtcgcagtgttatttctcgcacca |
41553087 |
T |
|
| Q |
221 |
cgtggcaatgctc |
233 |
Q |
| |
|
|| ||||||||| |
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|
| T |
41553088 |
agtagcaatgctc |
41553100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 53 - 233
Target Start/End: Original strand, 42667817 - 42667997
Alignment:
| Q |
53 |
ggaaaaagctttatggtgcgacaaaactaatgacgagaaacaacgaattaataagtgctgtaggatccttcatgagattgcaaattattttagttttcat |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |||||| |
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|
| T |
42667817 |
ggaaaaagctttatggtgcgacaaaactaatgacgagaaacaacgaattaataaatgccgtagaatccttcatgagattgcaaattattttaactttcat |
42667916 |
T |
|
| Q |
153 |
gtattttgaaattataacaccactaccccatgattcgtgtgcctgtcgtgctattgtttctcgcactacgtggcaatgctc |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
42667917 |
gtattttgaaattataacaccactaccccatgattcgtgtgcctgtcgtgctattgtttctcgcactagctagcaatgctc |
42667997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 53 - 233
Target Start/End: Complemental strand, 29412280 - 29412100
Alignment:
| Q |
53 |
ggaaaaagctttatggtgcgacaaaactaatgacgagaaacaacgaattaataagtgctgtaggatccttcatgagattgcaaattattttagttttcat |
152 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||| || |
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| T |
29412280 |
ggaaaaagttttatggtgcggcaaaactaatgacgagaaacaacgaattaataagcgccttaggatccttcatgagattgcaaattattttagctttaat |
29412181 |
T |
|
| Q |
153 |
gtattttgaaattataacaccactaccccatgattcgtgtgcctgtcgtgctattgtttctcgcactacgtggcaatgctc |
233 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||| ||||||||| ||||||||| |
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|
| T |
29412180 |
gtattttgaaattataacaccactactccatgattcgtgtgattgtctagctattgtttctagcactacgtagcaatgctc |
29412100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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