View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3134_low_4 (Length: 441)
Name: NF3134_low_4
Description: NF3134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3134_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 51582199 - 51582639
Alignment:
| Q |
1 |
acaattgagtgacagtgtaagaagactttatactgacggtgtatataaattaaatccttgattgattgattactaactgatacttacattaacgctcgat |
100 |
Q |
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| T |
51582199 |
acaattgagtcacagtgtaagaagactttatactgacggtgtatataaattaaatccttgattgattgattactaactgatacttacattaacactcgat |
51582298 |
T |
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| Q |
101 |
aatagaaataataagctgaacgtttgttattattacggttgagtttttactgaaatcagagaaagaggaaagtaaataagataaaaacactgcacttatc |
200 |
Q |
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| T |
51582299 |
aatagaaataataagctgaatgtttgttattattacggttgagtttttactgaaatcagagaaagaggaaagtaaataagataaaaacactgcacttatc |
51582398 |
T |
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| Q |
201 |
tcttattctaaactttattgtccctttccataggttgttgttcacaaagatggcccaagaggtgttcattttcgacgtgcaggacctcgacaaaaggtta |
300 |
Q |
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| T |
51582399 |
tcttattctaaactttactgtccctttccataggttgttgttcacaaagatggcccaagaggtgttcattttcgacgtgcaggacctcgacaaaaggtta |
51582498 |
T |
|
| Q |
301 |
tttcgcttgttgtttgtacacgtgttattaggagtagatgattcagttttgattaaattcactgacaacctagtaaattgttgtataggtatattttaga |
400 |
Q |
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| T |
51582499 |
tttcgcttgttgtttgtacacgtgttattaggagtagatgattcagttttgattaaatacactgacaacctagtaaattgttgtataggtatattttaga |
51582598 |
T |
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| Q |
401 |
tcagatgatgtcattgcttgtattgtcacgtgtggtggtct |
441 |
Q |
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| T |
51582599 |
tcagatgatgtcattgcttgtattgtcacatgtggtggtct |
51582639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 16962180 - 16962134
Alignment:
| Q |
11 |
gacagtgtaagaagactttatactgacggtgtatataaattaaatcc |
57 |
Q |
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| T |
16962180 |
gacagtgtaaaaaaactttatactgacagtgtatataaattatatcc |
16962134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 38148516 - 38148548
Alignment:
| Q |
27 |
tttatactgacggtgtatataaattaaatcctt |
59 |
Q |
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| T |
38148516 |
tttacactgacggtgtatataaattaaatcctt |
38148548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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