View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3134_low_6 (Length: 392)
Name: NF3134_low_6
Description: NF3134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3134_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 3 - 382
Target Start/End: Complemental strand, 43901329 - 43900950
Alignment:
| Q |
3 |
atcaataccatctaatatagcatcgccaaatggacgtgaagatgaatttccacccaaaaacttgttccacaagtaatcagaaacattttttgcatcatca |
102 |
Q |
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| T |
43901329 |
atcaataccatctaatatagcatcgccaaatggacgtgaagatgaatttccacccaaaaacttgttccacaagtaatcagaaacattttttgcatcatca |
43901230 |
T |
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| Q |
103 |
gtggaacctaaaccatattctccatctgctccgccaattgaaagcaagactttgatccttttcatttggcaattcttaatgtgtgtgcttaacattgtgc |
202 |
Q |
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| T |
43901229 |
gtggaacctaaaccatattctccatctgctccgccaattgaaagcaagactttgatccttttcatttggcaattcttaatgtgtgtgcttaacattgtgc |
43901130 |
T |
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| Q |
203 |
aatcattggaagaagggtcacaatgatctgctaagttgatttcaggtgttgttccattcccaaatttgttaagaaaagctatgattacataggagtagtt |
302 |
Q |
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| T |
43901129 |
aatcattggaagaagggtcacaatgatctgctaagttgatttcaggtgttgttccattcccaaatttgttaagaaaagctatgattacataggagtagtt |
43901030 |
T |
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| Q |
303 |
gttgtagtttccttttgcacatgtttctgttagggtaccctcattgttattttgaccccaataaattgcaatgttctctg |
382 |
Q |
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| T |
43901029 |
gttgtagtttccttttgcacatgtttctgttagggtaccctcattgttattttgaccccaataaattgcaatgttctctg |
43900950 |
T |
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