View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3134_low_9 (Length: 277)
Name: NF3134_low_9
Description: NF3134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3134_low_9 |
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| [»] chr8 (8 HSPs) |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 5607837 - 5607580
Alignment:
| Q |
20 |
gtacatacttcagaacttctgcaaaacttaatgggagggggacatggttggctgggagctggtagcacaatcattgtgacagctagggataaacatgtgc |
119 |
Q |
| |
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||||||| ||||||||||||||||||||| || |||| |||||||||||||| ||| ||||||| ||| |||||||||| |||||||||||||||||| |
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| T |
5607837 |
gtacataattcagaacttctgcaaaacttgattggagtaggacatggttggctaggatctggtagtacagtcattgtgactactagggataaacatgtgc |
5607738 |
T |
|
| Q |
120 |
taataagtggaggaattgaacaaatttatgaagttaagaagatgaactcccgaaattccctccaactttttagcttgaatgcttttgacaaagtcttgcc |
219 |
Q |
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| ||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| || |
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| T |
5607737 |
tgataagtggaggaattaagacaatatatgaagttaagaagatgaactcccgaaattccctcagaatttttagcttgaatgcttttgacaaagtctcacc |
5607638 |
T |
|
| Q |
220 |
taaggatggatatgtggagctctcaaaaagagcaattgattacgccaaaggcaaccct |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| |
|
|
| T |
5607637 |
taaggatggatatgtggagctctcaaaaagagcaattgattatgccagaggaaaccct |
5607580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 20 - 277
Target Start/End: Original strand, 5627533 - 5627790
Alignment:
| Q |
20 |
gtacatacttcagaacttctgcaaaacttaatgggagggggacatggttggctgggagctggtagcacaatcattgtgacagctagggataaacatgtgc |
119 |
Q |
| |
|
||||||| ||||||||||||||||||||| || |||| |||||||||||||| ||| ||||||| ||| |||||||||| |||||||||||||||||| |
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| T |
5627533 |
gtacataattcagaacttctgcaaaacttgattggagtaggacatggttggctaggatctggtagtacagtcattgtgactactagggataaacatgtgc |
5627632 |
T |
|
| Q |
120 |
taataagtggaggaattgaacaaatttatgaagttaagaagatgaactcccgaaattccctccaactttttagcttgaatgcttttgacaaagtcttgcc |
219 |
Q |
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| ||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| || |
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| T |
5627633 |
tgataagtggaggaattaagacaatatatgaagttaagaagatgaactcccgaaattccctcagaatttttagcttgaatgcttttgacaaagtctcacc |
5627732 |
T |
|
| Q |
220 |
taaggatggatatgtggagctctcaaaaagagcaattgattacgccaaaggcaaccct |
277 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| |
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| T |
5627733 |
taaggatggatatgtggagctctcaaaaagagcaattgattatgccagaggaaaccct |
5627790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 20 - 277
Target Start/End: Original strand, 13165184 - 13165441
Alignment:
| Q |
20 |
gtacatacttcagaacttctgcaaaacttaatgggagggggacatggttggctgggagctggtagcacaatcattgtgacagctagggataaacatgtgc |
119 |
Q |
| |
|
|||||||| || |||||||| |||||||| || |||| ||||||||||||| | ||||||||||||||| |||||||||| |||||||||| ||||||| |
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| T |
13165184 |
gtacatacctcggaacttctacaaaacttgattggagtgggacatggttggttaggagctggtagcacagtcattgtgacgactagggataagcatgtgc |
13165283 |
T |
|
| Q |
120 |
taataagtggaggaattgaacaaatttatgaagttaagaagatgaactcccgaaattccctccaactttttagcttgaatgcttttgacaaagtcttgcc |
219 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||| ||||| || |
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| T |
13165284 |
tgataagtggaggaattgaagaaatttatgaagttaagaagatgaactcccaaaattccctccagcttttctgcttgaatgcttttgacactgtcttccc |
13165383 |
T |
|
| Q |
220 |
taaggatggatatgtggagctctcaaaaagagcaattgattacgccaaaggcaaccct |
277 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||| ||||||||||||||||||| |||| |
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|
| T |
13165384 |
taaggagggatttgtggagctctcaaaaagagcgattgattacgccaaaggcatccct |
13165441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 20 - 277
Target Start/End: Original strand, 5550092 - 5550349
Alignment:
| Q |
20 |
gtacatacttcagaacttctgcaaaacttaatgggagggggacatggttggctgggagctggtagcacaatcattgtgacagctagggataaacatgtgc |
119 |
Q |
| |
|
||||||| ||||||||||||||||||||| || |||| |||||||||||||| ||| ||||||| ||| |||||||||| |||||||||||||||||| |
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| T |
5550092 |
gtacataattcagaacttctgcaaaacttgattggagtaggacatggttggctaggatctggtagtacagtcattgtgactactagggataaacatgtgc |
5550191 |
T |
|
| Q |
120 |
taataagtggaggaattgaacaaatttatgaagttaagaagatgaactcccgaaattccctccaactttttagcttgaatgcttttgacaaagtcttgcc |
219 |
Q |
| |
|
| ||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||| ||||||||| || |
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|
| T |
5550192 |
tgataagtggaggaattaagacaatatatgaagttaagaagatgaactcccgaaattccctccgacttttttgtttgaatgcttttaacaaagtctcacc |
5550291 |
T |
|
| Q |
220 |
taaggatggatatgtggagctctcaaaaagagcaattgattacgccaaaggcaaccct |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| |
|
|
| T |
5550292 |
taaggatggatatgtggagctctcaaaaagagcaattgattatgccagaggaaaccct |
5550349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 6310268 - 6310018
Alignment:
| Q |
20 |
gtacatacttcagaacttctgcaaaacttaatgggagggggacatggttggctgggagctggtagcacaatcattgtgacagctagggataaacatgtgc |
119 |
Q |
| |
|
||||||| ||||||||||||||||||||| || |||| |||||||||||||| ||| ||||||||||| |||||||||| |||||||||| ||||| |
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|
| T |
6310268 |
gtacataattcagaacttctgcaaaacttgattggagtaggacatggttggctaggatctggtagcacagtcattgtgacgactagggataagcatgtct |
6310169 |
T |
|
| Q |
120 |
taataagtggaggaattgaacaaatttatgaagttaagaagatgaactcccgaaattccctccaactttttagcttgaatgcttttgacaaagtcttgcc |
219 |
Q |
| |
|
| ||||||||||| |||||| ||||||||||||||||||||||||| |||| |||||||||||| ||||| |||||||||||||||| ||||||| || |
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| T |
6310168 |
tgataagtggagggattgaaaaaatttatgaagttaagaagatgaattcccaaaattccctccagcttttcagcttgaatgcttttggaaaagtctcacc |
6310069 |
T |
|
| Q |
220 |
taaggatggatatgtggagctctcaaaaagagcaattgattacgccaaagg |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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|
| T |
6310068 |
taaggatggatatgtggagctctcaaaaagagcagttgattatgccaaagg |
6310018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 276
Target Start/End: Original strand, 14405020 - 14405276
Alignment:
| Q |
20 |
gtacatacttcagaacttctgcaaaacttaatgggagggggacatggttggctgggagctggtagcacaatcattgtgacagctagggataaacatgtgc |
119 |
Q |
| |
|
||||||| |||||||||||| |||||||| || |||| ||||||||||||||| ||| ||||||||||| |||| ||||| | |||||||| ||||||| |
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|
| T |
14405020 |
gtacataattcagaacttcttcaaaacttgattggagtgggacatggttggctaggatctggtagcacagtcatcgtgactacgagggataagcatgtgc |
14405119 |
T |
|
| Q |
120 |
taataagtggaggaattgaacaaatttatgaagttaagaagatgaactcccgaaattccctccaactttttagcttgaatgcttttgacaaagtcttgcc |
219 |
Q |
| |
|
| |||||||||||||| || ||||||||||||||||||||||||||||||| |||||| | | ||||||||| ||||||||||||||||||||| ||| |
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|
| T |
14405120 |
tgataagtggaggaatcgacaaaatttatgaagttaagaagatgaactcccgcaattccgttaagctttttagcatgaatgcttttgacaaagtctcgcc |
14405219 |
T |
|
| Q |
220 |
taaggatggatatgtggagctctcaaaaagagcaattgattacgccaaaggcaaccc |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||||| || ||||| |
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|
| T |
14405220 |
taaggatggatatgtggagctctcaaaaagagcagttgattatgccaacggaaaccc |
14405276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 23 - 277
Target Start/End: Original strand, 32633573 - 32633827
Alignment:
| Q |
23 |
catacttcagaacttctgcaaaacttaatgggagggggacatggttggctgggagctggtagcacaatcattgtgacagctagggataaacatgtgctaa |
122 |
Q |
| |
|
||||||| ||||||||||||||||| || |||| || |||||||||| |||| |||||||| | ||||||| || | |||||||| |||||||| |
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|
| T |
32633573 |
catactttggaacttctgcaaaacttgattggagtcgggaatggttggctaggagatggtagcatagtcattgtaacgacaagggataagcatgtgctgg |
32633672 |
T |
|
| Q |
123 |
taagtggaggaattgaacaaatttatgaagttaagaagatgaactcccgaaattccctccaactttttagcttgaatgcttttgacaaagtcttgcctaa |
222 |
Q |
| |
|
| |||||||||||||| ||||| || ||||||| | |||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| |
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|
| T |
32633673 |
ttagtggaggaattgacaaaattcatcaagttaaagaaatgaactctcgaaactccctccagcttttcagcttcaatgcttttgacaaagtcttacctaa |
32633772 |
T |
|
| Q |
223 |
ggatggatatgtggagctctcaaaaagagcaattgattacgccaaaggcaaccct |
277 |
Q |
| |
|
||| |||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
32633773 |
ggagggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccct |
32633827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 32 - 193
Target Start/End: Original strand, 5571687 - 5571848
Alignment:
| Q |
32 |
gaacttctgcaaaacttaatgggagggggacatggttggctgggagctggtagcacaatcattgtgacagctagggataaacatgtgctaataagtggag |
131 |
Q |
| |
|
|||||||||||| |||| || |||| | || ||||||||| ||| ||||||||| | |||||||||| ||||||||||||||||||| |||||||||| |
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|
| T |
5571687 |
gaacttctgcaagacttgattggagtgagaggtggttggcttggacctggtagcatagtcattgtgacgactagggataaacatgtgctgataagtggag |
5571786 |
T |
|
| Q |
132 |
gaattgaacaaatttatgaagttaagaagatgaactcccgaaattccctccaactttttagc |
193 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5571787 |
gaattgacgaaatttatgaagttaagaagatgaactcccaaaattccctccaactttttagc |
5571848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 276
Target Start/End: Complemental strand, 13833 - 13577
Alignment:
| Q |
20 |
gtacatacttcagaacttctgcaaaacttaatgggagggggacatggttggctgggagctggtagcacaatcattgtgacagctagggataaacatgtgc |
119 |
Q |
| |
|
||||||| |||||||||||| |||||||| || |||| ||||||||||||||| ||| ||||||||||| |||| ||||| | |||||||| ||||||| |
|
|
| T |
13833 |
gtacataattcagaacttcttcaaaacttgattggagtgggacatggttggctaggatctggtagcacagtcatcgtgactacgagggataagcatgtgc |
13734 |
T |
|
| Q |
120 |
taataagtggaggaattgaacaaatttatgaagttaagaagatgaactcccgaaattccctccaactttttagcttgaatgcttttgacaaagtcttgcc |
219 |
Q |
| |
|
| |||||||||||||| || ||||||||||||||||||||||||||||||| |||||| | | ||||||||| ||||||||||||||||||||| ||| |
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| T |
13733 |
tgataagtggaggaatcgacaaaatttatgaagttaagaagatgaactcccgcaattccgttaagctttttagcatgaatgcttttgacaaagtctcgcc |
13634 |
T |
|
| Q |
220 |
taaggatggatatgtggagctctcaaaaagagcaattgattacgccaaaggcaaccc |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||||| || ||||| |
|
|
| T |
13633 |
taaggatggatatgtggagctctcaaaaagagcagttgattatgccaacggaaaccc |
13577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 19492777 - 19492705
Alignment:
| Q |
64 |
tggttggctgggagctggtagcacaatcattgtgacagctagggataaacatgtgctaataagtggaggaatt |
136 |
Q |
| |
|
||||||||| ||||||||||||| | |||||||||| |||||||| | ||||||| | ||||||||||||| |
|
|
| T |
19492777 |
tggttggctaggagctggtagcatagtcattgtgactactagggatgaggatgtgctgaaaagtggaggaatt |
19492705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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