View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3135_high_1 (Length: 349)

Name: NF3135_high_1
Description: NF3135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3135_high_1
NF3135_high_1
[»] chr6 (10 HSPs)
chr6 (17-237)||(26813650-26813870)
chr6 (17-237)||(27216626-27216846)
chr6 (139-237)||(27696494-27696592)
chr6 (128-173)||(26939257-26939302)
chr6 (56-103)||(28245625-28245672)
chr6 (139-237)||(28794568-28794666)
chr6 (139-192)||(25485251-25485304)
chr6 (139-192)||(25513079-25513132)
chr6 (139-192)||(25547172-25547225)
chr6 (139-187)||(26850878-26850926)
[»] chr4 (1 HSPs)
chr4 (130-237)||(5088971-5089078)
[»] scaffold1870 (1 HSPs)
scaffold1870 (139-237)||(975-1073)
[»] scaffold0419 (1 HSPs)
scaffold0419 (139-237)||(9694-9792)
[»] scaffold0277 (1 HSPs)
scaffold0277 (139-237)||(2594-2692)
[»] scaffold0038 (1 HSPs)
scaffold0038 (56-103)||(45787-45834)
[»] chr5 (1 HSPs)
chr5 (130-194)||(16693336-16693400)


Alignment Details
Target: chr6 (Bit Score: 173; Significance: 6e-93; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 26813870 - 26813650
Alignment:
Q  17 actttaagggaggaaaactcattagcttgttacaatccgcagcattcaagatttgaagttgacttaggaacccaatagaatcatgaactttagttaacct 116  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||  ||| ||    
T  26813870 actttaagggaggaaaactcaatagcttgttacaatccgcagcattcaagatttgaagttgacttaggaacccaatagaatcatgaattctaactaaact 26813771  T
Q  117 gttgcagtttttgaatgaaattttttctaaatttggaagacacgagacatcagatatatgtgttaagtattcacaattatcaattttcaaaattttcatc 216  Q
     ||||||||||| ||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26813770 cttgcagtttttaaatgaaattttttctaaatttgggagaaacgagacatctgatatatttgttaagtattcacaattatcaattttcaaaattttcatc 26813671  T
Q  217 ttctcgaacgtctgcataaac 237  Q
    |||||||||||||||||||||    
T  26813670 ttctcgaacgtctgcataaac 26813650  T

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Target: chr6; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 27216846 - 27216626
Alignment:
Q  17 actttaagggaggaaaactcattagcttgttacaatccgcagcattcaagatttgaagttgacttaggaacccaatagaatcatgaactttagttaacct 116  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||  ||| ||    
T  27216846 actttaagggaggaaaactcaatagcttgttacaatccgcagcattcaagatttgaagttgacttaggaacccaatagaatcatgaattgtaactaaact 27216747  T
Q  117 gttgcagtttttgaatgaaattttttctaaatttggaagacacgagacatcagatatatgtgttaagtattcacaattatcaattttcaaaattttcatc 216  Q
     ||||| ||||||||||||||||||||||||||||| ||||||||||| || | ||||| ||||||||||||||||||||||||||||||||||||||||    
T  27216746 cttgcaatttttgaatgaaattttttctaaatttgggagacacgagacgtcgggtatatttgttaagtattcacaattatcaattttcaaaattttcatc 27216647  T
Q  217 ttctcgaacgtctgcataaac 237  Q
    |||||||||||||||||||||    
T  27216646 ttctcgaacgtctgcataaac 27216626  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 237
Target Start/End: Original strand, 27696494 - 27696592
Alignment:
Q  139 ttttctaaatttggaagacacgagacatcagatatatgtgttaagtattcacaattatcaattttcaaaattttcatcttctcgaacgtctgcataaac 237  Q
    ||||||||||||| ||| |  |||||||| | |||||||||||| ||||||||||  || | | |||| |||||||| |||| |||| |||||||||||    
T  27696494 ttttctaaatttgaaaggcttgagacatcgggtatatgtgttaaatattcacaatcgtccaatgtcaagattttcatattctggaacttctgcataaac 27696592  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 26939302 - 26939257
Alignment:
Q  128 tgaatgaaattttttctaaatttggaagacacgagacatcagatat 173  Q
    |||||||||| |||||||||||||||||||| |||||||| |||||    
T  26939302 tgaatgaaatattttctaaatttggaagacatgagacatctgatat 26939257  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 28245672 - 28245625
Alignment:
Q  56 cagcattcaagatttgaagttgacttaggaacccaatagaatcatgaa 103  Q
    ||||||||||||||||||||| | |||||||||||| ||| |||||||    
T  28245672 cagcattcaagatttgaagtttatttaggaacccaacagattcatgaa 28245625  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 237
Target Start/End: Complemental strand, 28794666 - 28794568
Alignment:
Q  139 ttttctaaatttggaagacacgagacatcagatatatgtgttaagtattcacaattatcaattttcaaaattttcatcttctcgaacgtctgcataaac 237  Q
    ||||| |||||| ||||||  |||||||||| |||||| ||||| |||||||| || || | | |||| | |||||| |||| |||| |||||||||||    
T  28794666 ttttccaaattttgaagacctgagacatcaggtatatgggttaaatattcacacttgtccaatgtcaagactttcatgttctggaacttctgcataaac 28794568  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 25485304 - 25485251
Alignment:
Q  139 ttttctaaatttggaagacacgagacatcagatatatgtgttaagtattcacaa 192  Q
    ||||||| ||||||||||| ||||||||| | |||||| ||||| |||||||||    
T  25485304 ttttctagatttggaagacccgagacatcgggtatatgggttaaatattcacaa 25485251  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 25513132 - 25513079
Alignment:
Q  139 ttttctaaatttggaagacacgagacatcagatatatgtgttaagtattcacaa 192  Q
    ||||||| ||||||||||| ||||||||| | |||||| ||||| |||||||||    
T  25513132 ttttctagatttggaagacccgagacatcgggtatatgggttaaatattcacaa 25513079  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 25547225 - 25547172
Alignment:
Q  139 ttttctaaatttggaagacacgagacatcagatatatgtgttaagtattcacaa 192  Q
    ||||||| |||| |||||| ||||||||||| |||||| ||||| |||||||||    
T  25547225 ttttctagatttcgaagacccgagacatcaggtatatgggttaaatattcacaa 25547172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 26850926 - 26850878
Alignment:
Q  139 ttttctaaatttggaagacacgagacatcagatatatgtgttaagtatt 187  Q
    ||||||||||||||||| |  ||||||||||||||||| ||||| ||||    
T  26850926 ttttctaaatttggaagtccagagacatcagatatatgggttaaatatt 26850878  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 5088971 - 5089078
Alignment:
Q  130 aatgaaattttttctaaatttggaagacacgagacatcagatatatgtgttaagtattcacaattatcaattttcaaaattttcatcttctcgaacgtct 229  Q
    ||||||||||||||||||||||| ||||| ||||| || |   |||   |||| ||||||||||  |||| ||||||||||||||  ||||||||| |||    
T  5088971 aatgaaattttttctaaatttgggagacatgagacgtctggagtatcaattaaatattcacaatagtcaaatttcaaaattttcagattctcgaacttct 5089070  T
Q  230 gcataaac 237  Q
    ||||||||    
T  5089071 gcataaac 5089078  T

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Target: scaffold1870 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 237
Target Start/End: Complemental strand, 1073 - 975
Alignment:
Q  139 ttttctaaatttggaagacacgagacatcagatatatgtgttaagtattcacaattatcaattttcaaaattttcatcttctcgaacgtctgcataaac 237  Q
    |||||||||||| ||||||  |||||||||| |||||| ||||| ||||||||  | || | | |||| |||||||| |||| |||| |||||||||||    
T  1073 ttttctaaattttgaagacctgagacatcaggtatatgggttaaatattcacacctgtccaatgtcaagattttcatgttctggaacttctgcataaac 975  T

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Target: scaffold0419 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 237
Target Start/End: Complemental strand, 9792 - 9694
Alignment:
Q  139 ttttctaaatttggaagacacgagacatcagatatatgtgttaagtattcacaattatcaattttcaaaattttcatcttctcgaacgtctgcataaac 237  Q
    |||||||||||| ||||||  |||||||||| |||||| ||||| ||||||||  | || | | |||| |||||||| |||| |||| |||||||||||    
T  9792 ttttctaaattttgaagacctgagacatcaggtatatgggttaaatattcacacctgtccaatgtcaagattttcatgttctggaacttctgcataaac 9694  T

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Target: scaffold0277 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 237
Target Start/End: Original strand, 2594 - 2692
Alignment:
Q  139 ttttctaaatttggaagacacgagacatcagatatatgtgttaagtattcacaattatcaattttcaaaattttcatcttctcgaacgtctgcataaac 237  Q
    |||||||||||| ||||||  |||||||||| |||||| ||||| ||||||||  | || | | |||| |||||||| |||| |||| |||||||||||    
T  2594 ttttctaaattttgaagacctgagacatcaggtatatgggttaaatattcacacctgtccaatgtcaagattttcatgttctggaacttctgcataaac 2692  T

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Target: scaffold0038 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 45834 - 45787
Alignment:
Q  56 cagcattcaagatttgaagttgacttaggaacccaatagaatcatgaa 103  Q
    ||||||||||||||||||||| | |||||||||||| ||| |||||||    
T  45834 cagcattcaagatttgaagtttatttaggaacccaacagattcatgaa 45787  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 16693400 - 16693336
Alignment:
Q  130 aatgaaattttttctaaatttggaagacacgagacatcagatatatgtgttaagtattcacaatt 194  Q
    ||||||||||||||||||||||| ||||| || || ||| ||||||| || || |||| ||||||    
T  16693400 aatgaaattttttctaaatttgggagacaagatacgtcaaatatatgcgtcaaatatttacaatt 16693336  T

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