View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3135_high_4 (Length: 244)

Name: NF3135_high_4
Description: NF3135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3135_high_4
NF3135_high_4
[»] chr4 (1 HSPs)
chr4 (1-244)||(23675376-23675619)
[»] chr3 (2 HSPs)
chr3 (4-244)||(26457852-26458092)
chr3 (48-233)||(27641161-27641346)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 23675619 - 23675376
Alignment:
Q  1 cataactagtattttccgactcctttgtcctattcataatcccacctcatttccaacctcctcttgatctttaattgtcatttctttcatcttccgatca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23675619 cataactagtattttccgactcctttgtcctattcataatcccacctcatttccaacctcgtcttgatctttaattgtcatttctttcatcttccgatca 23675520  T
Q  101 acctccttcaaattctcatcaataaaagatgaaaaatcattaagatcatatttgctcattgaatttccattaaattctacggtttgaatataatgatcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23675519 acctccttcaaattctcatcaataaaagatgaaaaatcattaagatcatatttgctcattgaatttccattaaattctacggtttgaatataatgatcaa 23675420  T
Q  201 tgatattggtcatttccttctttctagtttcctccctttgcttc 244  Q
    ||||||||||||||||||||||||| ||||||  ||||||||||    
T  23675419 tgatattggtcatttccttctttctggtttccaacctttgcttc 23675376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 4 - 244
Target Start/End: Original strand, 26457852 - 26458092
Alignment:
Q  4 aactagtattttccgactcctttgtcctattcataatcccacctcatttccaacctcctcttgatctttaattgtcatttctttcatcttccgatcaacc 103  Q
    |||||||||||| ||  ||||| |||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| ||| ||||    
T  26457852 aactagtatttttcggatccttagtcctattcataatcccaccccatttccaacctccttttgatctttgattgtcatttctttcatcttcagattaacc 26457951  T
Q  104 tccttcaaattctcatcaataaaagatgaaaaatcattaagatcatatttgctcattgaatttccattaaattctacggtttgaatataatgatcaatga 203  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  26457952 tccttcaaattctcatcaataaaagatgaaaaatcattgagatcagatttgctcatcgaatttccattaaattctatggtttgaatataatgatcaatga 26458051  T
Q  204 tattggtcatttccttctttctagtttcctccctttgcttc 244  Q
    |||||||||||||| ||||||| ||||||||||||||||||    
T  26458052 tattggtcatttccatctttctggtttcctccctttgcttc 26458092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 48 - 233
Target Start/End: Complemental strand, 27641346 - 27641161
Alignment:
Q  48 catttccaacctcctcttgatctttaattgtcatttctttcatcttccgatcaacctccttcaaattctcatcaataaaagatgaaaaatcattaagatc 147  Q
    |||||||||||||||||  ||||| ||||  |||| ||||||||||  |||  |||||| |||||||||||||||||| | | || ||||||||||||||    
T  27641346 catttccaacctcctctcaatcttcaattcgcattcctttcatcttttgattgacctccctcaaattctcatcaataacataggacaaatcattaagatc 27641247  T
Q  148 atatttgctcattgaatttccattaaattctacggtttgaatataatgatcaatgatattggtcatttccttctttctagtttcct 233  Q
    |  |||||||||| ||| |||||||||||||  ||| |||||  |||||| ||||||||||||||||||||||||||| |||||||    
T  27641246 aggtttgctcattaaatatccattaaattctgtggtatgaatgaaatgatgaatgatattggtcatttccttctttctggtttcct 27641161  T

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