View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3135_low_2 (Length: 400)
Name: NF3135_low_2
Description: NF3135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3135_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 11 - 380
Target Start/End: Original strand, 46327693 - 46328062
Alignment:
| Q |
11 |
taattctacaagcaagcatgactcaatcaacttaatatagaatgaatactgtgcattctctttagagagtaatactgaatgtattagggtctagttgttt |
110 |
Q |
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| T |
46327693 |
taattctacaagcaagcatgactcgatcaacttaatatagaatgaatactgtgcattctctttagagagtaatgctgaatgtattagggtctagttgttt |
46327792 |
T |
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| Q |
111 |
tattgcaagtctgcactggttttaattatatactcgtcatatgatatcataatgggtataaattaagaagttagtctattttcctttcttttagctgtat |
210 |
Q |
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| T |
46327793 |
tattgcaagtctgcactggttttaattatatactcgtcatatgatatcataatgggtataaattaagaagttagtctattttcctttcttttagctgtat |
46327892 |
T |
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| Q |
211 |
cttccctctctaaaatttggaatgcaacgatactcgaattggaccctatcattcctcatattttgaatcataattgttgtaattataaatctctatatca |
310 |
Q |
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| T |
46327893 |
cttccctctctaaaatttggaatgcaacgatactcgaattggaccctatcattcctcatattttgaatcataattgttgtaattataaatctctatatca |
46327992 |
T |
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| Q |
311 |
taatagnnnnnnnatatctttatcacaggaaccgggcgaaatggaagctcagatggctgaagttggcact |
380 |
Q |
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| T |
46327993 |
taatagtttttttatatctttatcacaggaaccgggcgaaatggaagctcagatggctgaagttggcact |
46328062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 330 - 381
Target Start/End: Original strand, 46323534 - 46323585
Alignment:
| Q |
330 |
ttatcacaggaaccgggcgaaatggaagctcagatggctgaagttggcactg |
381 |
Q |
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| T |
46323534 |
ttatcacaggaaccgggcaaaatggaagctcagatggctgaagttggcactg |
46323585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 46523416 - 46523366
Alignment:
| Q |
331 |
tatcacaggaaccgggcgaaatggaagctcagatggctgaagttggcactg |
381 |
Q |
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| T |
46523416 |
tatcacaggaaccaggcaaaatggaagctgagatggctgaagttggcactg |
46523366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 46530844 - 46530794
Alignment:
| Q |
331 |
tatcacaggaaccgggcgaaatggaagctcagatggctgaagttggcactg |
381 |
Q |
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| T |
46530844 |
tatcacaggaaccaggcaaaatggaagctgagatggctgaagttggcactg |
46530794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 7476284 - 7476364
Alignment:
| Q |
151 |
atgatatcataatgggtataaattaagaagttagtctattttcctttcttttagc--tgtatcttccctctctaaaatttg |
229 |
Q |
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|||| |||||||||| || ||| ||||||||| |||||||||| |||||||||| |||||| | |||||||||| |||| |
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| T |
7476284 |
atgacatcataatggacatgaatgaagaagttaatctattttccgttcttttagctatgtatcattcctctctaaattttg |
7476364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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