View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3135_low_6 (Length: 287)

Name: NF3135_low_6
Description: NF3135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3135_low_6
NF3135_low_6
[»] chr1 (3 HSPs)
chr1 (1-162)||(42169655-42169816)
chr1 (160-260)||(42169472-42169572)
chr1 (80-137)||(48064182-48064241)
[»] chr7 (1 HSPs)
chr7 (80-109)||(5620261-5620290)
[»] chr4 (2 HSPs)
chr4 (80-134)||(17823012-17823068)
chr4 (81-109)||(30090132-30090160)
[»] chr5 (1 HSPs)
chr5 (80-108)||(14955597-14955625)
[»] chr3 (1 HSPs)
chr3 (81-109)||(37308232-37308260)


Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 42169816 - 42169655
Alignment:
Q  1 tttgaaatttgtgccatattccctcctttacgaaccctgtgaaaatgtaatttctgttagagattaccattaccctacgtaggccctgtttggataaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42169816 tttgaaatttgtgccatattccctcctttacgaaccctgtgaacatgtaatttctgttagagattaccattaccctacgtaggccctgtttggataaaca 42169717  T
Q  101 acttaattagcctcatagcataaggacttatcatgatattcacttatctataagttatttct 162  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42169716 acttaattagcctcatagcataaggactcatcatgatattcacttatctataagttatttct 42169655  T

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Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 160 - 260
Target Start/End: Complemental strand, 42169572 - 42169472
Alignment:
Q  160 tctcataaacggttataaaagtgcttatgtcactagataagcttgaataagtgaattcaaaaatgaaatttggaaagtagtattaattaccaacaaataa 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42169572 tctcataaacggttataaaagtgcttatgtcactagataagcttgaataagtgaattcaaaaatgaaatttggaaagtaatattaattaccaacaaataa 42169473  T
Q  260 t 260  Q
    |    
T  42169472 t 42169472  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 48064182 - 48064241
Alignment:
Q  80 taggccctgtttggataaacaacttaattagc--ctcatagcataaggacttatcatgat 137  Q
    |||||| |||||||||||||||||||||| ||  || ||||||||||  |||||||||||    
T  48064182 taggccatgtttggataaacaacttaatttgcagcttatagcataagcccttatcatgat 48064241  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 109
Target Start/End: Complemental strand, 5620290 - 5620261
Alignment:
Q  80 taggccctgtttggataaacaacttaatta 109  Q
    ||||||||||||||||||||||||||||||    
T  5620290 taggccctgtttggataaacaacttaatta 5620261  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 17823012 - 17823068
Alignment:
Q  80 taggccctgtttggataaacaacttaattagc--ctcatagcataaggacttatcat 134  Q
    |||||| |||||||||||||| ||||||| ||  |||||||||||||| ||||||||    
T  17823012 taggccttgtttggataaacagcttaatttgcagctcatagcataagggcttatcat 17823068  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 109
Target Start/End: Original strand, 30090132 - 30090160
Alignment:
Q  81 aggccctgtttggataaacaacttaatta 109  Q
    |||||||||||||||||||||||||||||    
T  30090132 aggccctgtttggataaacaacttaatta 30090160  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 108
Target Start/End: Original strand, 14955597 - 14955625
Alignment:
Q  80 taggccctgtttggataaacaacttaatt 108  Q
    |||||||||||||||||||||||||||||    
T  14955597 taggccctgtttggataaacaacttaatt 14955625  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 109
Target Start/End: Complemental strand, 37308260 - 37308232
Alignment:
Q  81 aggccctgtttggataaacaacttaatta 109  Q
    |||||||||||||||||||||||||||||    
T  37308260 aggccctgtttggataaacaacttaatta 37308232  T

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