View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3136_high_12 (Length: 395)
Name: NF3136_high_12
Description: NF3136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3136_high_12 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0077 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 39605091 - 39604687
Alignment:
| Q |
1 |
atcaaatccaccaccaccattgtgtaatctaacaccagtaaaatcataacccattgttcattcatctcttctatnnnnnnnntccaatcggataccnnnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||| || ||||||||||| |
|
|
| T |
39605091 |
atcaaatccaccaccaccattgtgtaatctaacaccagtagaatcataactcattcttcattcatctcttctataaaaaaa-tcaaatcggataccaaaa |
39604993 |
T |
|
| Q |
101 |
nnntgttcttaggaacttactagttgaaacaagaacaatcaataatcaaagcaaacacacaacgaggttaacaatggcggcacttttttctatgacagca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39604992 |
aaatgttcttaggaacttactagttgaaacaagaacaatcaataatcaaagcaaacacacagtgaggttaacaatggcggcacttttttctatgacagca |
39604893 |
T |
|
| Q |
201 |
aaaatttattatcacactaaacaaaagggagcgcctccggcagcaaaacaggcctccaaaaacccaaaaccaaacctacaaataggcaatctgccactta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39604892 |
aaaatttattatcacactaaacaaaagggagcgcctccggcagcaaaacaggtctccaaaaacccaaaaccaaacctacaaataggcaatccgccactta |
39604793 |
T |
|
| Q |
301 |
tatacaaaca-----------agaaaaacaagtaacacaaaggaaccttacagacagcaacataaaacgaagaaagcaaaaacaacacagacttaagcga |
389 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39604792 |
tatacaaacaagaaccaacaaagaaaaacaagtaacacaaaggaaccttacagacagcagcataaaacgaagaaagcaaaaacaacacagacttaagtga |
39604693 |
T |
|
| Q |
390 |
ctcagc |
395 |
Q |
| |
|
|||||| |
|
|
| T |
39604692 |
ctcagc |
39604687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 40793243 - 40793658
Alignment:
| Q |
1 |
atcaaatccaccaccaccattgtgtaatctaacaccagtaaaatcataacccattgttcattcatctcttctatnnnnnnnn-tccaatcggataccnnn |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| || ||||||||||| |
|
|
| T |
40793243 |
atcaaatccaccaccaccattgtgtaatctaacaccagtagaatcataacccattcttcattcatctcttctatagaaaaaaatcaaatcggataccaaa |
40793342 |
T |
|
| Q |
100 |
nnnntgttcttaggaacttactagttgaaacaagaacaatcaataatcaaagcaaacacacaacgaggttaacaat--ggcggcactttttt-------- |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
40793343 |
agaatgttcttaggaacttactagttgaaacaagaacaatcaataatcaaagcaaacacacagtgaggttaacaatatggcggcactttttttttctttt |
40793442 |
T |
|
| Q |
190 |
ctatgacagcaaaaatttattatcacactaaacaaaagggagcgcctccggcagcaaaacaggcctccaaaaacccaaaaccaaacctacaaataggcaa |
289 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40793443 |
ctatgacaacaaaaatttattatcacactaaacaaaagggagcgcctccagcagcaaatcaggcctccaaaaacccaaaaccaaacctacaaatatgcaa |
40793542 |
T |
|
| Q |
290 |
tctgccacttatatacaaac-----------aagaaaaacaagtaacacaaaggaaccttacagacagcaacataaaacgaagaaagcaaaaacaacaca |
378 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| |||| ||||||||||||||| |
|
|
| T |
40793543 |
tccgccacttatatacaaacaagaaccaacaaagaaaaacaagtaacacaaaggaaccttacagacagcagcat-aaacaaagatagcaaaaacaacaca |
40793641 |
T |
|
| Q |
379 |
gacttaagcgactcagc |
395 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
40793642 |
gacttaagcgactcagc |
40793658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 53066 - 53481
Alignment:
| Q |
1 |
atcaaatccaccaccaccattgtgtaatctaacaccagtaaaatcataacccattgttcattcatctcttctatnnnnnnnn--tccaatcggataccnn |
98 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||| |
|
|
| T |
53066 |
atcaaatccaccacgtccattgtgtaatctaacaccagtaaaatcataacccattcttcattcatctcttctataaaaaaaaaatcaaatcggataccaa |
53165 |
T |
|
| Q |
99 |
nnnnntgttcttaggaacttactagttgaaacaagaacaatcaataatcaaagcaaacacacaacgaggttaacaatggcggcactttttt--------c |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
53166 |
aaaaatgttcttaggaacttactagttgaaacaagaacaatcaataatcaaagcaaacacactgtgaggttaacaatggcggcactttttttttcttttc |
53265 |
T |
|
| Q |
191 |
tatgacagcaaaaatttattatcacactaaacaaaagggagcgcctccggcagcaaaacaggcctccaaaaacccaaaaccaaacctacaaataggcaat |
290 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53266 |
tatgacagcaaatatttattatcacactaaacaaaagagagcgcctccaacagcaaaacaggcctccaaaaacccaaaaccaaacctacaaataggcaat |
53365 |
T |
|
| Q |
291 |
ctgccacttatatacaaac-----------aagaaaaacaagtaacacaaaggaaccttacagacagcaacataaaacgaagaaagcaaaaacaacacag |
379 |
Q |
| |
|
| ||||||||||| |||| |||||||||||||||||||||| |||||||||||||||| |||||||| ||||||| ||||| ||||||| |
|
|
| T |
53366 |
ccaccacttatatataaacaagaaccaacaaagaaaaacaagtaacacaaagtaaccttacagacagcagcataaaacaaagaaagaaaaaataacacag |
53465 |
T |
|
| Q |
380 |
acttaagcgactcagc |
395 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
53466 |
acttaagcgactcagc |
53481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 34818603 - 34818644
Alignment:
| Q |
8 |
ccaccaccaccattgtgtaatctaacaccagtaaaatcataa |
49 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
34818603 |
ccaccaccaccattgtgtaatttaacaccagtagaatcataa |
34818644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 34818719 - 34818751
Alignment:
| Q |
104 |
tgttcttaggaacttactagttgaaacaagaac |
136 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
34818719 |
tgttcttaggaacttaccagttgaaacaagaac |
34818751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7369387 - 7369435
Alignment:
| Q |
1 |
atcaaatccaccaccaccattgtgtaatctaacaccagtaaaatcataa |
49 |
Q |
| |
|
||||||| ||||||||||| | ||||||||||||||||| |||||||| |
|
|
| T |
7369387 |
atcaaattcaccaccaccaccgcgtaatctaacaccagtagaatcataa |
7369435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University