View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3136_high_16 (Length: 306)
Name: NF3136_high_16
Description: NF3136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3136_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 11 - 293
Target Start/End: Complemental strand, 36877200 - 36876918
Alignment:
| Q |
11 |
cagagataattgctgtgtgagcttgttctggaaatttatggtacaaccttattacactatcccatttaccttccaatgtgtactcacttataaaatcgtt |
110 |
Q |
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| T |
36877200 |
cagagataattgctgtgtgagcttgttctggaaatttattgtacaaccttattacactatcccatttaccttccaatgtgtactcacttataaaatcgtt |
36877101 |
T |
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| Q |
111 |
aacttcatcggatgaaatgttgagtaatatgttatcactatcaacaatagcagtcatggtggcaaaaatgaatttgttcttgatgctaatgtatcattat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
36877100 |
aacttcatcggatgaaatgttgagtaatatgttatcactatcaacaatagcagtcatggtggcaataatgaaattgttcttgatgctaatgtatcattat |
36877001 |
T |
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| Q |
211 |
ttatcaattgccgctatatttataccgaagaatctaatacttatataaataaataaaacaacatctcatgtgatgtaactttt |
293 |
Q |
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| T |
36877000 |
ttatcaattgccgctatatttataccgaagaatctaatacttatataaataaataaaacaacatctcatgtgatgtaactttt |
36876918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 11 - 293
Target Start/End: Complemental strand, 36896167 - 36895885
Alignment:
| Q |
11 |
cagagataattgctgtgtgagcttgttctggaaatttatggtacaaccttattacactatcccatttaccttccaatgtgtactcacttataaaatcgtt |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36896167 |
cagagataattgctgtgtgagcttgttctggaaatttattgtacaaccttattacactatcccatttaccttccaatgtgtactcacttataaaatcgtt |
36896068 |
T |
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| Q |
111 |
aacttcatcggatgaaatgttgagtaatatgttatcactatcaacaatagcagtcatggtggcaaaaatgaatttgttcttgatgctaatgtatcattat |
210 |
Q |
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| T |
36896067 |
aatttcatcggatgaaatgttgagtaatatgttatcactatcaacaatagcagtcatggtggcaaaaatgaaattgttcttgatgctaatgtatcattat |
36895968 |
T |
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| Q |
211 |
ttatcaattgccgctatatttataccgaagaatctaatacttatataaataaataaaacaacatctcatgtgatgtaactttt |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36895967 |
ttatcaattgccgctatatttataccgaagaatctaatacttatataaataaataaaacaacatctcatgtgatgtaactttt |
36895885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 36889338 - 36889191
Alignment:
| Q |
11 |
cagagataattgctgtgtgagcttgttctggaaatttatggtacaaccttattacactatcccatttaccttccaatgtgtactcacttataaaatcgtt |
110 |
Q |
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|||||||||||||| |||| ||||||||||||||| || || | | |||| ||| | ||||||||||||||| |||| ||||||| || |||||| || |
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| T |
36889338 |
cagagataattgctttgtgggcttgttctggaaatgcataataaatcattataacattttcccatttaccttcccatgtatactcacctagaaaatcatt |
36889239 |
T |
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| Q |
111 |
aacttcatcggatgaaatgttgagtaatatgttatcactatcaacaat |
158 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||| |||| |
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| T |
36889238 |
tacttcatcgggtgaaatgttgagtaatatgttgtcactatcaccaat |
36889191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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