View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3136_high_20 (Length: 252)
Name: NF3136_high_20
Description: NF3136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3136_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 13319394 - 13319173
Alignment:
| Q |
16 |
ataaaaaatgtttgcgctcaaatgaaatttgcatccaaataaattattatatataaccatcgacaagataaaaattaaacatgatataaagagcatgttt |
115 |
Q |
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| T |
13319394 |
ataaagaatgtttgcgctcaaatgaaatttgcatccaaataaattattatatataaccatcgacaagataaaaattaaacatgatataaagagcatgttt |
13319295 |
T |
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| Q |
116 |
aaatcaacataaccacgccaggatcttcaaagtattacgattccagtccaaatttccctcagcaaattttgatgtagatcctgtaatatgaggaaagagc |
215 |
Q |
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| T |
13319294 |
aaatcaacataaccacgccaggatcttcaaagtattacgattccagtccaaatttccgtcagcaaattttgatgtagatcctgtaatatgaggaaagagc |
13319195 |
T |
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| Q |
216 |
aacaacacaagattatataaat |
237 |
Q |
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|||||||||||||||||||||| |
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| T |
13319194 |
aacaacacaagattatataaat |
13319173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 31 - 238
Target Start/End: Complemental strand, 13306401 - 13306197
Alignment:
| Q |
31 |
gctcaaatgaaatttgcatccaaataaattattatatataaccatcgacaagataaaaattaaacatgatataaagagcatgtttaaatcaacataacca |
130 |
Q |
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| T |
13306401 |
gctcaaatgaaatttgcatccaaataaatt--tat-tataataatcgacaagataaatattaaacatgatataaagaacaagttggaaacaacataatca |
13306305 |
T |
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| Q |
131 |
cgccaggatcttcaaagtattacgattccagtccaaatttccctcagcaaattttgatgtagatcctgtaatatgaggaaagagcaacaacacaagatta |
230 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
13306304 |
agccaggatcttcaaagtattacgattccagtccaatatttcctcagcaaattttgatgtagatcctgtaatatggggaaagagcaacaacacaaaatta |
13306205 |
T |
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| Q |
231 |
tataaatg |
238 |
Q |
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|||||||| |
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| T |
13306204 |
tataaatg |
13306197 |
T |
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