View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3136_high_5 (Length: 543)

Name: NF3136_high_5
Description: NF3136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3136_high_5
NF3136_high_5
[»] chr5 (3 HSPs)
chr5 (18-534)||(41584135-41584649)
chr5 (323-403)||(40179561-40179641)
chr5 (448-534)||(38604150-38604236)
[»] chr8 (2 HSPs)
chr8 (336-410)||(44461287-44461361)
chr8 (336-410)||(44468820-44468894)
[»] chr1 (1 HSPs)
chr1 (336-410)||(46360096-46360170)


Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 18 - 534
Target Start/End: Complemental strand, 41584649 - 41584135
Alignment:
Q  18 atccttaaaccataaaaatatattccaacattacagaagaaaatatcaaagccgaaaattgatatgcagaacaaggacactgagatcatttgctgcaaag 117  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41584649 atccttaaaccataaaaatatataccaacattacagaagaaaatatcaaagccgaaaattaatatgcagaacaaggacactgagatcatttgctgcaaag 41584550  T
Q  118 catatatgttttattgaatacagcttgtgtgtgtgt--atcaggtgagcctttatatctctgtccatctcttcgagatcaattttccaaaattttagttt 215  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41584549 catatatgttttattgaatacagcttgtgtgtgtgtgtatcaggtgagcctttatatctctgtccatctcttcgagatcaattttccaaaattttagttt 41584450  T
Q  216 ttcctgtctaagcaatgcacttcaaagagaaagcgtagactaacttgactacaataatagtcatacattnnnnnnnnncataaaaagttaacctgattcc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |         |||||| | || |||||| |||    
T  41584449 ttcctgtctaagcaatgcacttcaaagagaaagcgtagactaacttgactacaataatagtcata---ttaaaaaaaacataaagaatt-acctgactcc 41584354  T
Q  316 taactacttttcctaaccttttctccactcaattaattttgcattaagattctaacatattatcaaaatgatgccctaatattaagattcatttccttta 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41584353 taactacttttcctaaccttttctccactcaattaattttgcattaagattctaacatattatcaaaatgatgccctaatattaagattcatttccttta 41584254  T
Q  416 gcttcatgtttgccaagtgcctatccatagacttcatttcggctagctgctcttctgccatctccttatccaaagactccattgcctctagctgctttct 515  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41584253 gcttcatgttagccaagtgcctatccatagactccatttcggctagctgctcttctgccatctccttatccaaagactccattgcctctagctgctttct 41584154  T
Q  516 tgacattttcctattcata 534  Q
    |||||||||||||||||||    
T  41584153 tgacattttcctattcata 41584135  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 403
Target Start/End: Original strand, 40179561 - 40179641
Alignment:
Q  323 ttttcctaaccttttctccactcaattaattttgcattaagattctaacatattatcaaaatgatgccctaatattaagat 403  Q
    |||||| ||| ||||||||||||||||| ||||||||||| | | |||| |  ||| ||||||||||||| ||||||||||    
T  40179561 ttttccaaacattttctccactcaattatttttgcattaatagtttaacctcctatgaaaatgatgccctgatattaagat 40179641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 534
Target Start/End: Original strand, 38604150 - 38604236
Alignment:
Q  448 ttcatttcggctagctgctcttctgccatctccttatccaaagactccattgcctctagctgctttcttgacattttcctattcata 534  Q
    |||||||| |||||||| | ||||||||| ||| |||||| || ||||||| |||||||||||  | ||| ||||||||||| ||||    
T  38604150 ttcatttcagctagctgattttctgccatttccctatccataggctccatttcctctagctgcactattgtcattttcctatccata 38604236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 410
Target Start/End: Complemental strand, 44461361 - 44461287
Alignment:
Q  336 ttctccactcaattaattttgcattaagattctaacatattatcaaaatgatgccctaatattaagattcatttc 410  Q
    ||||| |||||||||||||||||| ||||||||||| |  ||||||||| |||||||||||||||||| ||||||    
T  44461361 ttctcaactcaattaattttgcatcaagattctaacttcctatcaaaataatgccctaatattaagatacatttc 44461287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 410
Target Start/End: Complemental strand, 44468894 - 44468820
Alignment:
Q  336 ttctccactcaattaattttgcattaagattctaacatattatcaaaatgatgccctaatattaagattcatttc 410  Q
    ||||| |||||||||||||||||| ||||||||||| |  ||||||||| |||||||||||||||||| ||||||    
T  44468894 ttctcaactcaattaattttgcatcaagattctaacttcctatcaaaataatgccctaatattaagatacatttc 44468820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 410
Target Start/End: Complemental strand, 46360170 - 46360096
Alignment:
Q  336 ttctccactcaattaattttgcattaagattctaacatattatcaaaatgatgccctaatattaagattcatttc 410  Q
    ||||| |||||||||||||||||| ||||||||||| |  ||||||||| |||||||||||||||||| ||||||    
T  46360170 ttctcaactcaattaattttgcatcaagattctaacttcctatcaaaataatgccctaatattaagatacatttc 46360096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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