View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3136_high_9 (Length: 474)

Name: NF3136_high_9
Description: NF3136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3136_high_9
NF3136_high_9
[»] chr3 (10 HSPs)
chr3 (198-459)||(5578100-5578361)
chr3 (20-147)||(5578357-5578483)
chr3 (342-408)||(32077480-32077546)
chr3 (342-408)||(51646885-51646951)
chr3 (342-393)||(4737800-4737851)
chr3 (342-408)||(46835541-46835607)
chr3 (209-266)||(5559694-5559750)
chr3 (343-380)||(8508672-8508709)
chr3 (358-408)||(8507228-8507279)
chr3 (209-266)||(5551145-5551200)
[»] chr4 (6 HSPs)
chr4 (52-135)||(23637807-23637889)
chr4 (52-135)||(36001425-36001507)
chr4 (349-408)||(47965540-47965599)
chr4 (328-385)||(14866628-14866686)
chr4 (342-383)||(30179071-30179112)
chr4 (356-393)||(52525953-52525990)
[»] chr1 (3 HSPs)
chr1 (53-135)||(1632115-1632197)
chr1 (333-408)||(20602208-20602284)
chr1 (342-393)||(29308696-29308747)
[»] chr8 (3 HSPs)
chr8 (342-393)||(14836399-14836450)
chr8 (342-393)||(27229237-27229288)
chr8 (342-393)||(30850214-30850265)
[»] chr6 (2 HSPs)
chr6 (342-393)||(29279776-29279827)
chr6 (341-393)||(9852102-9852154)
[»] chr2 (4 HSPs)
chr2 (342-393)||(28296914-28296965)
chr2 (342-393)||(24538237-24538288)
chr2 (349-393)||(22142305-22142349)
chr2 (342-376)||(7828944-7828978)
[»] chr7 (2 HSPs)
chr7 (332-393)||(27965240-27965304)
chr7 (349-393)||(45824591-45824635)
[»] scaffold0596 (1 HSPs)
scaffold0596 (346-393)||(1695-1742)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 198 - 459
Target Start/End: Complemental strand, 5578361 - 5578100
Alignment:
Q  198 aaaagccaactatttaagcaattcatgatagtaagcaaaatgatctgccacgcgtatttttcattttctacaaagtaaacttctattataaaggagagag 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5578361 aaaagccaactatttaagcaattcatgatagtaagcaaaatgatctgccacgcgtatttttcattttctacaaagtaaacttctattataaaggagagag 5578262  T
Q  298 atataagtcgatcttttgaataatctagttatatcatatcatatatacttatttctaatatgaataacattgttaacaatttgtgccaaccctaatgtag 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |    
T  5578261 atataagtcgatcttttgaataatctagttatatcatatcatatatacttatttctaatatgaataacattgttaacaatttgtgccaaccctaattctg 5578162  T
Q  398 atggttttggccagaacagtttggagccaaaaaagttgttatggcagttagatgcatctgtg 459  Q
    ||||||||||| |||||| |||||||||||||||  |||| |||| ||||||||||| ||||    
T  5578161 atggttttggctagaacaatttggagccaaaaaaactgttctggccgttagatgcatttgtg 5578100  T

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Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 5578483 - 5578357
Alignment:
Q  20 gtagtgattttagaaggtgatatacaacaggatgtgctcaaaggatgcatccatggtaatgtgaggattttatttctactaatttcaaagtgatatacaa 119  Q
    ||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5578483 gtagtgattctagaaggcgatatacaacgggatgtgctcaaaggatgcatccatggtaa-gtgaggattttatttctactaatttcaaagtgatatacaa 5578385  T
Q  120 ttaataaattagaaaacttcacgaaaag 147  Q
    ||||||||||||||||||| ||||||||    
T  5578384 ttaataaattagaaaacttaacgaaaag 5578357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 342 - 408
Target Start/End: Complemental strand, 32077546 - 32077480
Alignment:
Q  342 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaatgtagatggttttggc 408  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||| | ||||||||||||    
T  32077546 atacttatttctaatatgaataacattgctaacaatttatgccaaccctaatcttgatggttttggc 32077480  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 342 - 408
Target Start/End: Original strand, 51646885 - 51646951
Alignment:
Q  342 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaatgtagatggttttggc 408  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||| |||||||    
T  51646885 atacttatttctaatatgaataacattgttaacaatttgtgtcaaccctaatcttgatgtttttggc 51646951  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 342 - 393
Target Start/End: Complemental strand, 4737851 - 4737800
Alignment:
Q  342 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 393  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  4737851 atacttatttctaatatgaataacattgctaacaaattgtgccaaccctaat 4737800  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 342 - 408
Target Start/End: Complemental strand, 46835607 - 46835541
Alignment:
Q  342 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaatgtagatggttttggc 408  Q
    ||||||||||||||||||||||||| | ||||||| ||||| |||||||||| | ||||||||||||    
T  46835607 atacttatttctaatatgaataacaatattaacaaattgtgtcaaccctaatcttgatggttttggc 46835541  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 5559750 - 5559694
Alignment:
Q  209 atttaagcaattcatgatagtaagcaaaatgatctgccacgcgtatttttcattttct 266  Q
    ||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||    
T  5559750 atttaagcaattcatgatagtaagc-aaatgtcctgccacgcgtatttttcattttct 5559694  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 8508709 - 8508672
Alignment:
Q  343 tacttatttctaatatgaataacattgttaacaatttg 380  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8508709 tacttatttctaatatgaataacattgttaacaatttg 8508672  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 408
Target Start/End: Complemental strand, 8507279 - 8507228
Alignment:
Q  358 tgaataacattgttaacaatttgtgccaaccc-taatgtagatggttttggc 408  Q
    ||||||| |||||||||||||||||||||||| |||| | ||||||||||||    
T  8507279 tgaataatattgttaacaatttgtgccaacccttaatcttgatggttttggc 8507228  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 5551200 - 5551145
Alignment:
Q  209 atttaagcaattcatgatagtaagcaaaatgatctgccacgcgtatttttcattttct 266  Q
    ||||||| ||||||||||||||||| ||||| ||| |||||||||| |||||||||||    
T  5551200 atttaagaaattcatgatagtaagc-aaatg-tctaccacgcgtatatttcattttct 5551145  T

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Target: chr4 (Bit Score: 64; Significance: 9e-28; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 23637889 - 23637807
Alignment:
Q  52 tgtgctcaaaggatgcatccatggtaatgtgaggattttatttctactaatttcaaagtgatatacaattaataaattagaaaa 135  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||    
T  23637889 tgtgctcaaatgatgcatccatggtaatgtgaggattttgtttctactaatttcaaa-cgatatacaattaataaattagaaaa 23637807  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 36001507 - 36001425
Alignment:
Q  52 tgtgctcaaaggatgcatccatggtaatgtgaggattttatttctactaatttcaaagtgatatacaattaataaattagaaaa 135  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||    
T  36001507 tgtgctcaaatgatgcatccatggtaatgtgaggattttgtttctactaatttcaaa-cgatatacaattaataaattagaaaa 36001425  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 349 - 408
Target Start/End: Complemental strand, 47965599 - 47965540
Alignment:
Q  349 tttctaatatgaataacattgttaacaatttgtgccaaccctaatgtagatggttttggc 408  Q
    ||||||||||||||||||||| |||||||||||||||||||||||   ||||||||||||    
T  47965599 tttctaatatgaataacattgctaacaatttgtgccaaccctaatcctgatggttttggc 47965540  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 385
Target Start/End: Complemental strand, 14866686 - 14866628
Alignment:
Q  328 atatcatatcatat-atacttatttctaatatgaataacattgttaacaatttgtgcca 385  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||    
T  14866686 atatcatatcatatcatacttatttctaatatgaataacaatgttaacaaattgtgcca 14866628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 383
Target Start/End: Complemental strand, 30179112 - 30179071
Alignment:
Q  342 atacttatttctaatatgaataacattgttaacaatttgtgc 383  Q
    |||||||||||||||||||||||||||| |||||| ||||||    
T  30179112 atacttatttctaatatgaataacattgctaacaaattgtgc 30179071  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 52525990 - 52525953
Alignment:
Q  356 tatgaataacattgttaacaatttgtgccaaccctaat 393  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  52525990 tatgaataacattgctaacaatttgtgtcaaccctaat 52525953  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 1632197 - 1632115
Alignment:
Q  53 gtgctcaaaggatgcatccatggtaatgtgaggattttatttctactaatttcaaagtgatatacaattaataaattagaaaa 135  Q
    |||||||||  | ||||| ||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||    
T  1632197 gtgctcaaaccacgcatcaatggtaatgtgaggattttgtttctactaattttaaaatgatatacaattaataaattagaaaa 1632115  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 333 - 408
Target Start/End: Original strand, 20602208 - 20602284
Alignment:
Q  333 atatcatat-atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaatgtagatggttttggc 408  Q
    ||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||    
T  20602208 atatcatatcatatttaattctaatatgaataacattgttaacaatttgtgccaaccctcatcttgatggttttggc 20602284  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 393
Target Start/End: Original strand, 29308696 - 29308747
Alignment:
Q  342 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 393  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||    
T  29308696 atacttatttctaatatgaataacattgttaacaaattgtgtcaaccttaat 29308747  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 342 - 393
Target Start/End: Original strand, 14836399 - 14836450
Alignment:
Q  342 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14836399 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 14836450  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 393
Target Start/End: Original strand, 27229237 - 27229288
Alignment:
Q  342 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 393  Q
    |||||||||||||||||||||| ||||||||| |||||| | ||||||||||    
T  27229237 atacttatttctaatatgaatagcattgttaataatttgcgtcaaccctaat 27229288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 393
Target Start/End: Complemental strand, 30850265 - 30850214
Alignment:
Q  342 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 393  Q
    ||||||||||||||||||||||||| || ||| || ||||||||||||||||    
T  30850265 atacttatttctaatatgaataacactgctaaaaaattgtgccaaccctaat 30850214  T

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Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 342 - 393
Target Start/End: Original strand, 29279776 - 29279827
Alignment:
Q  342 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 393  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  29279776 atacttatttctaatatgaatagcattgttaacaaattgtgccaaccctaat 29279827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 393
Target Start/End: Original strand, 9852102 - 9852154
Alignment:
Q  341 tatacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 393  Q
    |||||||||||||||||||||||||| || ||| || ||||||||||||||||    
T  9852102 tatacttatttctaatatgaataacactgctaaaaaattgtgccaaccctaat 9852154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 342 - 393
Target Start/End: Complemental strand, 28296965 - 28296914
Alignment:
Q  342 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 393  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  28296965 atacttatttctaatatgaatagcattgttaacaaattgtgccaaccctaat 28296914  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 393
Target Start/End: Original strand, 24538237 - 24538288
Alignment:
Q  342 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 393  Q
    ||||||||||||||||||||||||| ||||||||| ||||| ||||||||||    
T  24538237 atacttatttctaatatgaataacaatgttaacaaattgtgtcaaccctaat 24538288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 393
Target Start/End: Complemental strand, 22142349 - 22142305
Alignment:
Q  349 tttctaatatgaataacattgttaacaatttgtgccaaccctaat 393  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||    
T  22142349 tttctaatatgaatagcattgttaacaaattgtgccaaccctaat 22142305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 376
Target Start/End: Complemental strand, 7828978 - 7828944
Alignment:
Q  342 atacttatttctaatatgaataacattgttaacaa 376  Q
    ||||||||||||||||||||||||| |||||||||    
T  7828978 atacttatttctaatatgaataacaatgttaacaa 7828944  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 393
Target Start/End: Complemental strand, 27965304 - 27965240
Alignment:
Q  332 catatcatat-atacttatttctaatatg--aataacattgttaacaatttgtgccaaccctaat 393  Q
    |||||||||| |||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  27965304 catatcatatcatacttatttctaatatataaataacattgttaacaatttgtgccaaccctaat 27965240  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 393
Target Start/End: Original strand, 45824591 - 45824635
Alignment:
Q  349 tttctaatatgaataacattgttaacaatttgtgccaaccctaat 393  Q
    |||||||||  |||| ||||| |||||||||||||||||||||||    
T  45824591 tttctaatagcaatagcattgctaacaatttgtgccaaccctaat 45824635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 393
Target Start/End: Complemental strand, 1742 - 1695
Alignment:
Q  346 ttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 393  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||    
T  1742 ttatttctaatatgaataacaatgttaacattttgtgccaaccctaat 1695  T

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