View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3136_low_1 (Length: 918)

Name: NF3136_low_1
Description: NF3136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3136_low_1
NF3136_low_1
[»] chr7 (6 HSPs)
chr7 (10-762)||(18714925-18715660)
chr7 (771-903)||(18714810-18714942)
chr7 (529-599)||(25314032-25314102)
chr7 (542-592)||(21450970-21451020)
chr7 (546-599)||(25268807-25268860)
chr7 (574-627)||(33044013-33044066)
[»] chr5 (4 HSPs)
chr5 (528-599)||(41894406-41894477)
chr5 (542-600)||(6926328-6926386)
chr5 (542-589)||(39647142-39647189)
chr5 (529-594)||(2643865-2643930)
[»] chr8 (1 HSPs)
chr8 (528-594)||(33120561-33120627)
[»] chr1 (2 HSPs)
chr1 (506-598)||(6025946-6026041)
chr1 (544-599)||(4541569-4541624)
[»] chr6 (1 HSPs)
chr6 (540-595)||(24769302-24769357)
[»] chr4 (3 HSPs)
chr4 (527-586)||(47789165-47789224)
chr4 (540-597)||(2317026-2317083)
chr4 (528-589)||(50794573-50794634)


Alignment Details
Target: chr7 (Bit Score: 628; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 10 - 762
Target Start/End: Complemental strand, 18715660 - 18714925
Alignment:
Q  10 attattctcattttaattttttgctaattagaaacttaatcatgaaaccatgaatacattagaaagcttctctctaaaaagtttcactctagctgctcag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18715660 attattctcattttaattttttgctaattagaaacttaatcatgaaaccatgaatacattagaaagcttctctctaaaaagtttcactctagctgctcag 18715561  T
Q  110 ttttagttagcaactctagaagttcaatgggtttaatttagagaaataaatagttatgactttttaactatttcttagatgttttcatatgctacatgac 209  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18715560 ttttagttagtaactctagaagttcaatgagtttaatttagagaaataaatagttatgactttttaactatttcttagatgttttcatatgctacatgac 18715461  T
Q  210 accgaaagttgatttgtgggtataggtggtacagtatcatcttatgggcttaaagaaacttcggctaggaataggattagatcatgtttttcttaataca 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18715460 accgaaagttgatttgtgggtataggtggtacagtatcatcttatgggcttaaagaaacttcggctaggaataggattagatcatgtttttcttaataca 18715361  T
Q  310 gattgcgataggcctgtcaggactcaggataaatgatcttacatgttaacttgacttttgcgtaggtcatggcacaacacagagttgtcacagacaaaga 409  Q
     |||| ||||||||||||||||       |||||||||| |||||||||||||||||||||||||||||          |||||||| ||||||||| ||    
T  18715360 tattgtgataggcctgtcagga-------taaatgatctaacatgttaacttgacttttgcgtaggtca----------cagagttgccacagacaagga 18715278  T
Q  410 caagagaagaaaaatcagaggtataaaatattaattgatgtcagtgttgtcaagcaggaattgcagaaaataacagtttgttcaaattacgcttagcagt 509  Q
    || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  18715277 catgagaaaaaaaatcagaggtataaaatattaattgatgtcagtgttgtcaagcaggaattgcagaaaatagtagtttgttcaaattacgcttagcagt 18715178  T
Q  510 gctatagcgctgatataactatttaacgacactttgtactaaatagaatatttcagaacaaaaacgatttgttcaaattctgctatgctacattagcact 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  18715177 gctatagcgctgatataactatttaacgacactttgtactaaatagaatatttcagaacaaaaacaatttgttcaaattctgctatgctatattagcact 18715078  T
Q  610 atagcggctatttgacaactctaactgattcaagtattttctatatttgatgcgacaactcacaatagataaaacaacaaatacatacttcttacttact 709  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18715077 atagcggctatttgacaacactaactgattcaagtattttctatatttgatgccacaactcacaatagataaaacaacaaatacatacttcttacttact 18714978  T
Q  710 ccatgtatggccaaatttacatgcatcaaaaattgtgaaataacacaaaacat 762  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18714977 ccatgtatggccaaatttacatgcagcaaaaattgtgaaataacacaaaacat 18714925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 771 - 903
Target Start/End: Complemental strand, 18714942 - 18714810
Alignment:
Q  771 tgaaataacacaaaacatatgataccttacccatgactcaacggatttgtatctaatatgcacaggcacatgtcatcttcataaagctgtgagaaagaca 870  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||  ||||    
T  18714942 tgaaataacacaaaacatatgataccttacccatgactcaatggatttgtatccaatatgcacaggcacatgtcatcttcataaagctgttagagtgaca 18714843  T
Q  871 agatattnnnnnnngtcaaggtgaagagaaaac 903  Q
    |||||||       || ||||||||||||||||    
T  18714842 agatattagaaagagttaaggtgaagagaaaac 18714810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 529 - 599
Target Start/End: Original strand, 25314032 - 25314102
Alignment:
Q  529 tatttaacgacactttgtactaaatagaatatttcagaacaaaaacgatttgttcaaattctgctatgcta 599  Q
    |||||||| ||||||||||| ||||||  |||  |||||||| ||||||||||||||||||  ||||||||    
T  25314032 tatttaacaacactttgtaccaaatagtgtatcacagaacaataacgatttgttcaaattcctctatgcta 25314102  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 542 - 592
Target Start/End: Original strand, 21450970 - 21451020
Alignment:
Q  542 tttgtactaaatagaatatttcagaacaaaaacgatttgttcaaattctgc 592  Q
    |||||||||||||| ||||| |||||||| |  ||||||||||||||||||    
T  21450970 tttgtactaaatagcatattccagaacaatagtgatttgttcaaattctgc 21451020  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 546 - 599
Target Start/End: Complemental strand, 25268860 - 25268807
Alignment:
Q  546 tactaaatagaatatttcagaacaaaaacgatttgttcaaattctgctatgcta 599  Q
    ||||||||||  |||  |||||||| ||||||||||||||||||||||| ||||    
T  25268860 tactaaatagtgtatagcagaacaataacgatttgttcaaattctgctacgcta 25268807  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 627
Target Start/End: Original strand, 33044013 - 33044066
Alignment:
Q  574 cgatttgttcaaattctgctatgctacattagcactatagcggctatttgacaa 627  Q
    ||||||||||||||||||||||||||   |  ||||||||| ||||||||||||    
T  33044013 cgatttgttcaaattctgctatgctattgtgtcactatagctgctatttgacaa 33044066  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 528 - 599
Target Start/End: Complemental strand, 41894477 - 41894406
Alignment:
Q  528 ctatttaacgacactttgtactaaatagaatatttcagaacaaaaacgatttgttcaaattctgctatgcta 599  Q
    |||||| || |||||||||| |||||||  |||| |||||||| ||| ||||||||||||||||||| ||||    
T  41894477 ctatttgacaacactttgtagtaaatagcgtattgcagaacaataacaatttgttcaaattctgctaggcta 41894406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 542 - 600
Target Start/End: Complemental strand, 6926386 - 6926328
Alignment:
Q  542 tttgtactaaatagaatatttcagaacaaaaacgatttgttcaaattctgctatgctac 600  Q
    |||||||||||||| |||||  ||||| | || ||||||||||||||||||||||||||    
T  6926386 tttgtactaaatagcatattgtagaacgataatgatttgttcaaattctgctatgctac 6926328  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 589
Target Start/End: Original strand, 39647142 - 39647189
Alignment:
Q  542 tttgtactaaatagaatatttcagaacaaaaacgatttgttcaaattc 589  Q
    |||||||||||||| ||||  |||||||| ||||||||||||||||||    
T  39647142 tttgtactaaatagcatatcgcagaacaataacgatttgttcaaattc 39647189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 529 - 594
Target Start/End: Complemental strand, 2643930 - 2643865
Alignment:
Q  529 tatttaacgacactttgtactaaatagaatatttcagaacaaaaacgatttgttcaaattctgcta 594  Q
    ||||| || |||||| ||||| |||||  |||| |||||||| ||||||||||||||||| |||||    
T  2643930 tatttgacaacacttcgtacttaatagcgtattccagaacaataacgatttgttcaaattatgcta 2643865  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 528 - 594
Target Start/End: Original strand, 33120561 - 33120627
Alignment:
Q  528 ctatttaacgacactttgtactaaatagaatatttcagaacaaaaacgatttgttcaaattctgcta 594  Q
    |||||| || ||| |||||||||||||| ||||| |||||||| ||||||||||||| |||| ||||    
T  33120561 ctatttgacaacattttgtactaaatagcatattgcagaacaacaacgatttgttcagattccgcta 33120627  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 506 - 598
Target Start/End: Original strand, 6025946 - 6026041
Alignment:
Q  506 cagtgctatagcgctgatata---actatttaacgacactttgtactaaatagaatatttcagaacaaaaacgatttgttcaaattctgctatgct 598  Q
    |||||||||||||||| ||||   ||||||| || ||| |||||||||||||| ||||  | |||||| ||| ||||||||||||||  |||||||    
T  6025946 cagtgctatagcgctgctatagccactatttgacaacattttgtactaaatagcatatcgcggaacaataactatttgttcaaattcccctatgct 6026041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 599
Target Start/End: Complemental strand, 4541624 - 4541569
Alignment:
Q  544 tgtactaaatagaatatttcagaacaaaaacgatttgttcaaattctgctatgcta 599  Q
    ||||| |||||| ||||| || ||||| |||||||||||||| |||||||||||||    
T  4541624 tgtaccaaatagcatattgcaaaacaataacgatttgttcaagttctgctatgcta 4541569  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 595
Target Start/End: Complemental strand, 24769357 - 24769302
Alignment:
Q  540 actttgtactaaatagaatatttcagaacaaaaacgatttgttcaaattctgctat 595  Q
    ||||||||||||||||  |||| |||||||| || ||||||||||||||| |||||    
T  24769357 actttgtactaaatagtgtattgcagaacaataatgatttgttcaaattccgctat 24769302  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 586
Target Start/End: Complemental strand, 47789224 - 47789165
Alignment:
Q  527 actatttaacgacactttgtactaaatagaatatttcagaacaaaaacgatttgttcaaa 586  Q
    ||||||| || ||| ||||||||||||||| |||| |||||| | |||||||||||||||    
T  47789224 actatttgacaacagtttgtactaaatagagtattgcagaacgataacgatttgttcaaa 47789165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 540 - 597
Target Start/End: Original strand, 2317026 - 2317083
Alignment:
Q  540 actttgtactaaatagaatatttcagaacaaaaacgatttgttcaaattctgctatgc 597  Q
    ||||| |||||||||| |||   ||||||||| ||||||||||||||||| |||||||    
T  2317026 actttctactaaatagcatagcacagaacaaacacgatttgttcaaattccgctatgc 2317083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 528 - 589
Target Start/End: Complemental strand, 50794634 - 50794573
Alignment:
Q  528 ctatttaacgacactttgtactaaatagaatatttcagaacaaaaacgatttgttcaaattc 589  Q
    |||||| || |||||||||||||| ||| ||| | ||||||||  |||||||||||||||||    
T  50794634 ctatttgacaacactttgtactaactagcatagtgcagaacaatgacgatttgttcaaattc 50794573  T

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