View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3136_low_11 (Length: 421)
Name: NF3136_low_11
Description: NF3136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3136_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 36 - 281
Target Start/End: Complemental strand, 11917750 - 11917504
Alignment:
| Q |
36 |
atctctttttgaaccaagtatagt-aggtcaagtcatagggttaggtttgtattaatattcaactatcgagacattgaatcaattatctattttgctcac |
134 |
Q |
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| T |
11917750 |
atctctttttgaaccaagtatacttaggcctagtcatagggttaggtttgtattaatattcaactatcgagtcattgaatcaatcatctattttgctcac |
11917651 |
T |
|
| Q |
135 |
gatcggaagtcgattgatacaatggatttcatcagtagtgataactaaactaatttgtactaatattaacgaacttgcaactacatttaacaaacttcac |
234 |
Q |
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| T |
11917650 |
gttcggaagtcgattgatacaatggatttcattagtagtgataactaaacttatttgtactaatattaatgaacttgcaactacatttaacaaacttcac |
11917551 |
T |
|
| Q |
235 |
taatattaaataataaaaaaccgcaaataatttaaacattataaact |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11917550 |
taatattaaataataaaaaaccgcaaataatttaaacattataaact |
11917504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 2558854 - 2558894
Alignment:
| Q |
107 |
cattgaatcaattatctattttgctcacgatcggaagtcga |
147 |
Q |
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| T |
2558854 |
cattgaatcaattgtctattttgctcaacatcggaagtcga |
2558894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 21602431 - 21602378
Alignment:
| Q |
111 |
gaatcaattatctattttgctcacgatcggaagtcgattgatacaatggatttc |
164 |
Q |
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| T |
21602431 |
gaatcaataatctattttgctcagcaacggaagttgattgatacaatggatttc |
21602378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 4365585 - 4365534
Alignment:
| Q |
180 |
taaactaatttgt-actaatattaacgaacttgcaactacatttaacaaact |
230 |
Q |
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||||||||||||| |||||||| ||| |||||| |||||||||||||||||| |
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| T |
4365585 |
taaactaatttgtcactaatataaaccaacttgtaactacatttaacaaact |
4365534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 1388612 - 1388648
Alignment:
| Q |
3 |
caccattattccatggctaccctagttgtcaccatct |
39 |
Q |
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| T |
1388612 |
caccatttttccatgggtaccctagttgtcaccatct |
1388648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 31040859 - 31040891
Alignment:
| Q |
3 |
caccattattccatggctaccctagttgtcacc |
35 |
Q |
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| T |
31040859 |
caccattattccatgggtaccctagttgtcacc |
31040891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 36566480 - 36566524
Alignment:
| Q |
3 |
caccattattccatggctaccctagttgtcaccatctctttttga |
47 |
Q |
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||||||| |||||||| |||||||||||||||||| | ||||||| |
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| T |
36566480 |
caccattcttccatgggtaccctagttgtcaccatatgtttttga |
36566524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 31855403 - 31855440
Alignment:
| Q |
193 |
actaatattaacgaacttgcaactacatttaacaaact |
230 |
Q |
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|||||||||||| |||||| |||||||||||||||||| |
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| T |
31855403 |
actaatattaactaacttgtaactacatttaacaaact |
31855440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 23437740 - 23437776
Alignment:
| Q |
1 |
ctcaccattattccatggctaccctagttgtcaccat |
37 |
Q |
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| T |
23437740 |
ctcaccattcttccatgggtaccctagttgtcaccat |
23437776 |
T |
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