View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3136_low_12 (Length: 409)
Name: NF3136_low_12
Description: NF3136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3136_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 22104317 - 22103922
Alignment:
| Q |
1 |
actttcttttcaacatcagcgccattaactagctccttcaccatcactttctttgaatttatacatcaatctattgggaaaattggtaatgtaatacaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
22104317 |
actttcttttcaacatcagcgccattaactagctccttcaccatcactttctttgaatttatacatcaatctattaggaaaatttgtaatgtaatacaca |
22104218 |
T |
|
| Q |
101 |
gcagatacctgagttgacactgctggagcgttgccactcttatcttcagcagttgtgatttttgacagttttgagcctatgcctgcattgctgatgcgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| || | | |
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| T |
22104217 |
gcagatacctgagttgacactgctggagcgttgccactctcatcttcagcagttgtggtttttgacagttttgagcctatgcctgcattgcttatacacg |
22104118 |
T |
|
| Q |
201 |
agtctccctcttgcatgtactgatcctccctcgatttgataacaccctccctcgtacacgaaaacggacgatcacgacagtgtgtcaatgaccgtccacg |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||| |||||||||||||| |||||| |
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| T |
22104117 |
agtctccctcttgcctgtactgatcctccctcgattcgataacaccctccctcgtacccaaaaacggacgatcacgacggtgtgtcaatgaccatccacg |
22104018 |
T |
|
| Q |
301 |
tccatactcatgcaaaaccctatccctgggcaattgatcaacacgcaaattgaccctactgcgaggcctgctgtcaaacctgtcgatgccatacct |
396 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
22104017 |
tccatactcatgcaaaaccctaaccctgggcaattgatcaacacgcaaactgaccctactgcgaggcctgctgtcaaacctgtcggtgccatacct |
22103922 |
T |
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