View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3136_low_14 (Length: 375)
Name: NF3136_low_14
Description: NF3136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3136_low_14 |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 375
Target Start/End: Complemental strand, 17081499 - 17081141
Alignment:
| Q |
17 |
agtcatcccatccaccaaaacttggtgcatctcggctgccactatcaaccgaaccgttgttctcaactacccatgactgcatccctgccttcctcgtatt |
116 |
Q |
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| T |
17081499 |
agtcatcccatccaccaaaacttggtgcatctcggctgccactatcaaccgaaccgttgttctcaactacccatgactgcatccctgccttcctcgtatt |
17081400 |
T |
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| Q |
117 |
agttttctggttttcttccggctcttcctcaactcggctgtcatttacatttcggcgtttcctcttcatcctatacttgcgctttggtttgctctcggtc |
216 |
Q |
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| T |
17081399 |
agttttctggttttcttccggctcttcctcaactcggctgtcatttacatttcggcgtttcctcttcatcctatacttgcgctttggtttgctctcggtc |
17081300 |
T |
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| Q |
217 |
cgtccccataatttctcaaatgccagtgcaagtgctgactgaccgagagggattgctaatgccatgaggaaagcttttgggccggtagaaagcaaccatg |
316 |
Q |
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| T |
17081299 |
cgtccccataatttctcaaatgccagtgcaagtgctgactgaccgagaggtattgctaatgccatgaggaaagcttttgggccggtagaaagcaaccatg |
17081200 |
T |
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| Q |
317 |
acccaaggatgataggcagcgtccaaccataggatttaaaaacctgcactgtgaaaatg |
375 |
Q |
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| T |
17081199 |
acgcaaggatgatgggcagcgtccaaccataggatttaaaaacctgcactgcgaaaatg |
17081141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 33 - 375
Target Start/End: Complemental strand, 35213328 - 35212986
Alignment:
| Q |
33 |
aaaacttggtgcatctcggctgccactatcaaccgaaccgttgttctcaactacccatgactgcatccctgccttcctcgtattagttttctggttttct |
132 |
Q |
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| T |
35213328 |
aaaacttggtgcatctcggctgccactatcaacggaaccgtaattctccactacccacgactgcatccctgccttcctcgtattagttttctggttttct |
35213229 |
T |
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| Q |
133 |
tccggctcttcctcaactcggctgtcatttacatttcggcgtttcctcttcatcctatacttgcgctttggtttgctctcggtccgtccccataatttct |
232 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35213228 |
tccggctcttcctcaactcatgtgtcatttacatttcggcgtttcctcttcattctacacttgcgctttggtttgctctcggtccgtccccataatttct |
35213129 |
T |
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| Q |
233 |
caaatgccagtgcaagtgctgactgaccgagagggattgctaatgccatgaggaaagcttttgggccggtagaaagcaaccatgacccaaggatgatagg |
332 |
Q |
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| T |
35213128 |
caaatgccagggcaagtgctgactgaccaagagcgattgctaatgccatgaggaaagcttttgggccggtagaaagcaaccatgatgcaaggatgatggg |
35213029 |
T |
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| Q |
333 |
cagcgtccaaccataggatttaaaaacctgcactgtgaaaatg |
375 |
Q |
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| T |
35213028 |
cagcgtccaaccataggatttaaaaacctgcactgcgaaaatg |
35212986 |
T |
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