View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3136_low_16 (Length: 309)

Name: NF3136_low_16
Description: NF3136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3136_low_16
NF3136_low_16
[»] chr7 (8 HSPs)
chr7 (170-297)||(33416476-33416603)
chr7 (18-143)||(33416324-33416449)
chr7 (18-143)||(33410475-33410600)
chr7 (18-143)||(33424377-33424502)
chr7 (19-143)||(33428087-33428211)
chr7 (18-112)||(33436529-33436623)
chr7 (190-297)||(33424566-33424674)
chr7 (190-245)||(33410664-33410719)
[»] scaffold0262 (1 HSPs)
scaffold0262 (18-86)||(5180-5248)
[»] chr1 (2 HSPs)
chr1 (18-125)||(24985049-24985156)
chr1 (18-125)||(24990879-24990986)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 170 - 297
Target Start/End: Original strand, 33416476 - 33416603
Alignment:
Q  170 ttagatcatgtttgataaatacaaaagttaattataactatgagatacactaattagttaagcaattgactatgaactaaataaacttgaaaccaaatgg 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33416476 ttagatcatgtttgataaatacaaaagttaattataactatgagatacactaattagttaagcaattgactatgaactaaataaacttgaaaccaaatgg 33416575  T
Q  270 acatttattttttccttttacataccta 297  Q
    ||||||||||||||||||||||||||||    
T  33416576 acatttattttttccttttacataccta 33416603  T

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Target: chr7; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 33416324 - 33416449
Alignment:
Q  18 ccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtgcagctctggaagagtgtgccattcactttaaaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33416324 ccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtgcagctctggaagagtgtgccattcactttaaaaa 33416423  T
Q  118 cattgtgccttgaagggtcatagttg 143  Q
    ||||||||||||||||||||||||||    
T  33416424 cattgtgccttgaagggtcatagttg 33416449  T

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Target: chr7; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 33410475 - 33410600
Alignment:
Q  18 ccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtgcagctctggaagagtgtgccattcactttaaaaa 117  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||| ||||    
T  33410475 ccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtgcagctttgaaagagtgtgccatttactttgaaaa 33410574  T
Q  118 cattgtgccttgaagggtcatagttg 143  Q
    ||||||||||||  || |||||||||    
T  33410575 cattgtgccttgccggatcatagttg 33410600  T

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Target: chr7; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 33424377 - 33424502
Alignment:
Q  18 ccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtgcagctctggaagagtgtgccattcactttaaaaa 117  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||| ||||    
T  33424377 ccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtgcagctttgaaagagtgtgccatttactttgaaaa 33424476  T
Q  118 cattgtgccttgaagggtcatagttg 143  Q
    ||||||||||||  || |||||||||    
T  33424477 cattgtgccttgccggatcatagttg 33424502  T

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Target: chr7; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 33428211 - 33428087
Alignment:
Q  19 cttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtgcagctctggaagagtgtgccattcactttaaaaac 118  Q
    ||||||| |||||  |||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||| |||||| |||||||| |||||    
T  33428211 cttcagtctttaggggaataatatcctttccggtagaaagtgcttcgttttgtggtggaaaagtgcatctctgaaagaatgtgccgttcactttgaaaac 33428112  T
Q  119 attgtgccttgaagggtcatagttg 143  Q
    |||||| ||||||||||||||||||    
T  33428111 attgtgtcttgaagggtcatagttg 33428087  T

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Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 33436529 - 33436623
Alignment:
Q  18 ccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtgcagctctggaagagtgtgccattcacttt 112  Q
    ||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||  ||  || ||||| |||||||||||    
T  33436529 ccttctgtttttagttgaatgatatcctttcccgtagagagtgcttcattttttggtggaaaagtgcagtccttaaaaagtgtaccattcacttt 33436623  T

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Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 190 - 297
Target Start/End: Original strand, 33424566 - 33424674
Alignment:
Q  190 acaaaagttaattataactatgagatacactaattagttaagcaattgactatgaactaaataaacttgaaaccaaatggacatttatttttt-cctttt 288  Q
    |||||||||||||||||  || | || |||||| |||||| ||| |||| ||| ||||||||||||||||||||||||| | |||| |||||| ||||||    
T  33424566 acaaaagttaattataatcataatatgcactaactagttatgcagttgattataaactaaataaacttgaaaccaaatgaaaatttgttttttccctttt 33424665  T
Q  289 acataccta 297  Q
    |||||||||    
T  33424666 acataccta 33424674  T

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Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 33410664 - 33410719
Alignment:
Q  190 acaaaagttaattataactatgagatacactaattagttaagcaattgactatgaa 245  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  33410664 acaaaagttaattataattatgagatacactaattagttaaacaattgaatatgaa 33410719  T

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Target: scaffold0262 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 5248 - 5180
Alignment:
Q  18 ccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtgcag 86  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  5248 ccttcagtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtgcag 5180  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 24985156 - 24985049
Alignment:
Q  18 ccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtgcagctctggaagagtgtgccattcactttaaaaa 117  Q
    ||||| ||||| |||||||| |  ||||||||||| ||||||||||| |||| || ||||||||||||||| || |||||| | |||| |||||| || |    
T  24985156 ccttcggttttcagttgaataacgtcctttccggtggaaagtgcttcattttctgatggaaaagtgcagctttgaaagagtttaccatccactttgaaga 24985057  T
Q  118 cattgtgc 125  Q
    ||||||||    
T  24985056 cattgtgc 24985049  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 24990986 - 24990879
Alignment:
Q  18 ccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtgcagctctggaagagtgtgccattcactttaaaaa 117  Q
    ||||| ||||| |||||||| |  ||||||||||| ||||||||||| |||| || ||||||||||||||| || |||||| | |||| |||||| || |    
T  24990986 ccttcggttttcagttgaataacgtcctttccggtggaaagtgcttcattttctgatggaaaagtgcagctttgaaagagtttaccatccactttgaaga 24990887  T
Q  118 cattgtgc 125  Q
    ||||||||    
T  24990886 cattgtgc 24990879  T

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