View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3136_low_19 (Length: 294)
Name: NF3136_low_19
Description: NF3136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3136_low_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 28 - 284
Target Start/End: Complemental strand, 32590803 - 32590545
Alignment:
| Q |
28 |
aagggataagagcaattaatttggtctacatgtcatcgacatcccaaattctagattatcacaaaattctcatttaatatatctgtc--aaaaagtaagg |
125 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
32590803 |
aagggacaagagcaattaatttggtctacatgtcatcgacatcccaaattctagattatctaaaaattctcatttaatatatttgtcgaaaaaagtaagg |
32590704 |
T |
|
| Q |
126 |
taacacaactccttaagcaacaaaatacaaattaaaaagattcaaaaagtcaaatgtttttgtccaaattttggactagaaacattgaacnnnnnnnnnn |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32590703 |
taacacaactccttaagcaacaaaatacaaattaaaaagattcaaaaagtcaaatgtttttgtccagattttggactagaaacattgaacttttttattt |
32590604 |
T |
|
| Q |
226 |
nnctctccacatatttaattaccgatggagtattaaactgtccaaattttagacctatg |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32590603 |
ttctctccacatatttaattaccgatggagtattaaactgtccaaattttagacctatg |
32590545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 32594878 - 32594844
Alignment:
| Q |
77 |
tctagattatcacaaaattctcatttaatatatct |
111 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
32594878 |
tctagagtatcacaaaattctcatttaatatatct |
32594844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University