View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3136_low_23 (Length: 240)
Name: NF3136_low_23
Description: NF3136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3136_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 24214135 - 24213914
Alignment:
| Q |
1 |
acattttgatcaaggaacttaaggattttcaaaccatcctcgtattgggatggaaaacgatgttcgggggaaagaccataattaacagacacaacaatgg |
100 |
Q |
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| T |
24214135 |
acattttgatcaaggaacttaaggattttcaaaccatcctcgtattgggatggaaaacgatgttcgggggaaagaccataattaacagacacaacaatgg |
24214036 |
T |
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| Q |
101 |
taggaaaagaacgacaaaataagcgacaaagcatgtggtatggaatagaagagggagacatatatgcatagccaccaccatgaaagaatatgataacagg |
200 |
Q |
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| T |
24214035 |
caggaaaagaacgacaaaataagcgacaaagcatgtggtatggaatagaagagggagacatatatgcatagccaccaccatgaaagaatatgataacagg |
24213936 |
T |
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| Q |
201 |
caaagattttgtggtggcagtg |
222 |
Q |
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| T |
24213935 |
caaagattttgtggtggcagtg |
24213914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 24226412 - 24226355
Alignment:
| Q |
19 |
ttaaggattttcaaaccatcctcgtattgggatggaaaacgatgttcgggggaaagac |
76 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||| |||| ||||| |
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| T |
24226412 |
ttaaggattttcaaaccatcattatattgggatggaaaacgatgttcaggggcaagac |
24226355 |
T |
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