View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3136_low_25 (Length: 237)
Name: NF3136_low_25
Description: NF3136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3136_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 10248832 - 10249042
Alignment:
| Q |
14 |
cagagagaagcaaaaagaagggtgaagaaagagagttatgaggttggaattattcaagttaagaatagtgagaatgttaatgatgatgatgaggaacata |
113 |
Q |
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| T |
10248832 |
cagaaagaagcaaaaagaagggtgaagaaagagagttatgaggttggaattattcaagttaagaatagtgagaatgttaatgatgatgatgaggaacata |
10248931 |
T |
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| Q |
114 |
ttccaaatgcaagaaggtgcactcattgtttgtcacaaaggaccccacaatggagggcaggaccattgggaccaaaaacactatgcaatgcatgtggtgt |
213 |
Q |
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| T |
10248932 |
ttccaaatgcaagaaggtgcactcattgtttgtcacaaaggaccccacaatggagggcaggaccattgggaccaaaaacactatgcaatgcatgtggtgt |
10249031 |
T |
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| Q |
214 |
gaggtacaagt |
224 |
Q |
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| T |
10249032 |
gaggtacaagt |
10249042 |
T |
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Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 33075266 - 33075167
Alignment:
| Q |
123 |
caagaaggtgcactcattgtttgtcacaaaggaccccacaatggagggcaggaccattgggaccaaaaacactatgcaatgcatgtggtgtgaggtacaa |
222 |
Q |
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| T |
33075266 |
caaggaggtgtacacattgtttgtcacaaaggaccccacaatggagggcaggcccattaggcccaaagacactatgcaatgcatgtggtgtgaggtacaa |
33075167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 42714522 - 42714588
Alignment:
| Q |
158 |
ccacaatggagggcaggaccattgggaccaaaaacactatgcaatgcatgtggtgtgaggtacaagt |
224 |
Q |
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| T |
42714522 |
ccacaatggagggcaggtccaatggggccaaaaacactctgcaatgcttgcggtgttcggtacaagt |
42714588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 4315097 - 4315050
Alignment:
| Q |
171 |
caggaccattgggaccaaaaacactatgcaatgcatgtggtgtgaggt |
218 |
Q |
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| T |
4315097 |
caggaccgatgggaccgaaaacactatgcaatgcttgtggtgtgaggt |
4315050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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