View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3136_low_27 (Length: 235)

Name: NF3136_low_27
Description: NF3136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3136_low_27
NF3136_low_27
[»] chr4 (8 HSPs)
chr4 (1-221)||(30227479-30227700)
chr4 (1-80)||(30047096-30047175)
chr4 (1-80)||(30061437-30061516)
chr4 (7-80)||(30030795-30030868)
chr4 (132-221)||(30221762-30221848)
chr4 (132-221)||(30030984-30031073)
chr4 (91-128)||(30047238-30047275)
chr4 (91-128)||(30061579-30061616)
[»] scaffold2055 (2 HSPs)
scaffold2055 (9-78)||(608-677)
scaffold2055 (91-130)||(969-1008)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 30227479 - 30227700
Alignment:
Q  1 tcccagttgtgttatagattattttagctaccacctgaaacacaaacccaataaaatagagaacattaataaatcaaagaaaccactatgtcttagcttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30227479 tcccagttgtgttatagattattttagctaccacctgaaacacaaacccaataaaatagagaacattaataaatcaaagaaaccactatgtcttagcttt 30227578  T
Q  101 caaaattattaatttatgaatgaaaataaagttttagatgagtggtt-aaatattaacgtgtcacacacctcagacccccttaacttcatttccaaatcc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30227579 caaaattattaatttatgaatgaaaataaagttttagatgagtggttaaaatattaacgtgtcacacacctcagacccccttaacttcatttccaaatcc 30227678  T
Q  200 aagagcaaagctatgagataaa 221  Q
    ||||||||||||||||||||||    
T  30227679 aagagcaaagctatgagataaa 30227700  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 30047096 - 30047175
Alignment:
Q  1 tcccagttgtgttatagattattttagctaccacctgaaacacaaacccaataaaatagagaacattaataaatcaaaga 80  Q
    ||||| ||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  30047096 tcccaattgtgttgtagattattttagctactgcctgaaacacaaacccaataaaatagagaacattaataaatcaaaga 30047175  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 30061437 - 30061516
Alignment:
Q  1 tcccagttgtgttatagattattttagctaccacctgaaacacaaacccaataaaatagagaacattaataaatcaaaga 80  Q
    ||||| ||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  30061437 tcccaattgtgttgtagattattttagctactgcctgaaacacaaacccaataaaatagagaacattaataaatcaaaga 30061516  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 30030795 - 30030868
Alignment:
Q  7 ttgtgttatagattattttagctaccacctgaaacacaaacccaataaaatagagaacattaataaatcaaaga 80  Q
    ||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  30030795 ttgtgttgtagattattttagctactgcctgaaacacaaacccaataaaatagagaacattaataaatcaaaga 30030868  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 30221848 - 30221762
Alignment:
Q  132 ttttagatgagtggttaaatattaacgtgtcacacacctcagacccccttaacttcatttccaaatccaagagcaaagctatgagataaa 221  Q
    ||||||||||||||||||||| |   |||| ||| |||||||||||  |||| ||||| ||||||| |||||||||| ||||||||||||    
T  30221848 ttttagatgagtggttaaataat---gtgtgacatacctcagacccttttaatttcatctccaaattcaagagcaaacctatgagataaa 30221762  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 30030984 - 30031073
Alignment:
Q  132 ttttagatgagtggttaaatattaacgtgtcacacacctcagacccccttaacttcatttccaaatccaagagcaaagctatgagataaa 221  Q
    |||||| |||||  ||||| ||||| |||||||||||||||| ||| ||||   |||| |||||||||| |||||||||||| |||||||    
T  30030984 ttttaggtgagttattaaagattaatgtgtcacacacctcaggccctcttagtctcatctccaaatccatgagcaaagctataagataaa 30031073  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 30047238 - 30047275
Alignment:
Q  91 tcttagctttcaaaattattaatttatgaatgaaaata 128  Q
    |||| |||||||||||||||||||||||||||||||||    
T  30047238 tctttgctttcaaaattattaatttatgaatgaaaata 30047275  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 30061579 - 30061616
Alignment:
Q  91 tcttagctttcaaaattattaatttatgaatgaaaata 128  Q
    |||| |||||||||||||||||||||||||||||||||    
T  30061579 tctttgctttcaaaattattaatttatgaatgaaaata 30061616  T

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Target: scaffold2055 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold2055
Description:

Target: scaffold2055; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 608 - 677
Alignment:
Q  9 gtgttatagattattttagctaccacctgaaacacaaacccaataaaatagagaacattaataaatcaaa 78  Q
    ||||| ||||||| |||||||||  ||||||||||||||| ||| ||  |||||||||||||||||||||    
T  608 gtgttgtagattactttagctactgcctgaaacacaaaccaaattaatcagagaacattaataaatcaaa 677  T

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Target: scaffold2055; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 969 - 1008
Alignment:
Q  91 tcttagctttcaaaattattaatttatgaatgaaaataaa 130  Q
    ||||||||||||||||||||| ||||||||| ||||||||    
T  969 tcttagctttcaaaattattagtttatgaataaaaataaa 1008  T

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