View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3136_low_28 (Length: 220)
Name: NF3136_low_28
Description: NF3136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3136_low_28 |
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| [»] chr4 (5 HSPs) |
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| [»] scaffold2055 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 25 - 220
Target Start/End: Original strand, 30227279 - 30227472
Alignment:
| Q |
25 |
ttggaaaatagggatagatagaaaatgagatattaaatgaatgttagaaaataaaaggtgtctaaatatcattgtttgttttaaaacaatatatatacct |
124 |
Q |
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| T |
30227279 |
ttggaaaatagggatagatagaaaatgagatattaaatgaatgttagaaaataaaaggtgtctaaatatcattgtttgaa--aaaacaatatatatacct |
30227376 |
T |
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| Q |
125 |
caggtccatttgtcatggtgaaacacaacccatttactggatgatttgccaaagtcatcttctctactggccctacaatgtttgacataagaacac |
220 |
Q |
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| T |
30227377 |
caggtccatttgtcatggtgaaacacaacccatttactggatgatttgccaaagtcatcttctctactggccctacaatgtttgacataagaacac |
30227472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 119 - 220
Target Start/End: Original strand, 30046988 - 30047089
Alignment:
| Q |
119 |
atacctcaggtccatttgtcatggtgaaacacaacccatttactggatgatttgccaaagtcatcttctctactggccctacaatgtttgacataagaac |
218 |
Q |
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| T |
30046988 |
atacctcaggtccacctgtcgcggtgaaatacaatccatatactggatgatttgccaaagtcatcttctctaccggtcctacgaggttagacattagaac |
30047087 |
T |
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| Q |
219 |
ac |
220 |
Q |
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| T |
30047088 |
ac |
30047089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 119 - 220
Target Start/End: Original strand, 30061329 - 30061430
Alignment:
| Q |
119 |
atacctcaggtccatttgtcatggtgaaacacaacccatttactggatgatttgccaaagtcatcttctctactggccctacaatgtttgacataagaac |
218 |
Q |
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| T |
30061329 |
atacctcaggtccacctgtcgcggtgaaatacaatccatatactggatgatttgccaaagtcatcttctctaccggtcctacgaggttagacattagaac |
30061428 |
T |
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| Q |
219 |
ac |
220 |
Q |
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| T |
30061429 |
ac |
30061430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 30222175 - 30222090
Alignment:
| Q |
115 |
atatatacctcaggtccatttgtcatggtgaaacacaacccatttactggatgatttgccaaagtcatcttctctactggccctac |
200 |
Q |
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| T |
30222175 |
atatatacctctggtccacctgtcatggtgaaataaaatccatttattggatgatttgccaaagccattttctctactggtcctac |
30222090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 220
Target Start/End: Original strand, 30030681 - 30030782
Alignment:
| Q |
119 |
atacctcaggtccatttgtcatggtgaaacacaacccatttactggatgatttgccaaagtcatcttctctactggccctacaatgtttgacataagaac |
218 |
Q |
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| T |
30030681 |
atacctcaggtccacctgccacggtgaaatataatccatttactggatggtttgccaaagccattttttctatcggtcctacgaggttagacataaaaac |
30030780 |
T |
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| Q |
219 |
ac |
220 |
Q |
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|| |
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| T |
30030781 |
ac |
30030782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2055 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold2055
Description:
Target: scaffold2055; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 220
Target Start/End: Original strand, 492 - 593
Alignment:
| Q |
119 |
atacctcaggtccatttgtcatggtgaaacacaacccatttactggatgatttgccaaagtcatcttctctactggccctacaatgtttgacataagaac |
218 |
Q |
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| T |
492 |
atacctcaggtccacctgtcgcagtgaaatacaatccatttactggatgatttgccaaagccattttttctactggtcctacgaggttagacataagaac |
591 |
T |
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| Q |
219 |
ac |
220 |
Q |
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|| |
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| T |
592 |
ac |
593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 35271482 - 35271545
Alignment:
| Q |
37 |
gatagatagaaaatgagatattaaatgaatgttagaaaataaaaggtgtctaaatatcattgtt |
100 |
Q |
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|||||| ||||||||||||||| |||| || | ||||||| |||||||||||||||||||||| |
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| T |
35271482 |
gatagagagaaaatgagatattgaatgcatataagaaaatttaaggtgtctaaatatcattgtt |
35271545 |
T |
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